Hb_000000_070

Information

Type -
Description -
Location Contig0: 126094-127658
Sequence    

Annotation

kegg
ID rcu:RCOM_1593180
description cytochrome P450, putative (EC:4.2.1.92)
nr
ID AAY27751.1
description allene oxide synthase [Hevea brasiliensis]
swissprot
ID P48417
description Allene oxide synthase, chloroplastic OS=Linum usitatissimum GN=CYP74A PE=1 SV=1
trembl
ID Q4ZJ74
description Allene oxide synthase OS=Hevea brasiliensis GN=aos PE=2 SV=1
Gene Ontology
ID GO:0004497
description allene oxide synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 011_M04.ab1: 127017-127762 , 052_P16.ab1: 127039-127762

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000000_070 0.0 - - allene oxide synthase [Hevea brasiliensis]
2 Hb_006615_180 0.0759375036 - - hypothetical protein B456_003G103400 [Gossypium raimondii]
3 Hb_002529_080 0.0771252028 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase [Jatropha curcas]
4 Hb_001568_120 0.0948250804 - - hypothetical protein JCGZ_05918 [Jatropha curcas]
5 Hb_117127_010 0.0950640771 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH106 [Jatropha curcas]
6 Hb_008667_030 0.0956357791 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
7 Hb_004122_020 0.0969429037 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
8 Hb_006698_020 0.0973626402 - - hypothetical protein JCGZ_04585 [Jatropha curcas]
9 Hb_008040_060 0.1018783509 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
10 Hb_003602_090 0.1097927558 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
11 Hb_000094_010 0.1105565078 - - lrr receptor protein kinase, putative [Ricinus communis]
12 Hb_009510_050 0.1140778313 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002475_010 0.1171425479 - - hypothetical protein JCGZ_22530 [Jatropha curcas]
14 Hb_000098_250 0.1173012999 - - UDP-glucose flavonoid 3-O-glucosyltransferase [Medicago truncatula]
15 Hb_001248_170 0.1196534964 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
16 Hb_000723_060 0.120552692 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
17 Hb_000656_370 0.1210017894 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
18 Hb_013720_010 0.1210382905 - - Putative DNA repair RAD23-3 -like protein [Gossypium arboreum]
19 Hb_000338_030 0.1212591584 transcription factor TF Family: HB hypothetical protein JCGZ_21254 [Jatropha curcas]
20 Hb_002234_200 0.1249666517 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000000_070 Hb_000000_070 Hb_006615_180 Hb_006615_180 Hb_000000_070--Hb_006615_180 Hb_002529_080 Hb_002529_080 Hb_000000_070--Hb_002529_080 Hb_001568_120 Hb_001568_120 Hb_000000_070--Hb_001568_120 Hb_117127_010 Hb_117127_010 Hb_000000_070--Hb_117127_010 Hb_008667_030 Hb_008667_030 Hb_000000_070--Hb_008667_030 Hb_004122_020 Hb_004122_020 Hb_000000_070--Hb_004122_020 Hb_003602_090 Hb_003602_090 Hb_006615_180--Hb_003602_090 Hb_000723_060 Hb_000723_060 Hb_006615_180--Hb_000723_060 Hb_000101_140 Hb_000101_140 Hb_006615_180--Hb_000101_140 Hb_009510_050 Hb_009510_050 Hb_006615_180--Hb_009510_050 Hb_006615_180--Hb_117127_010 Hb_002529_080--Hb_008667_030 Hb_000094_010 Hb_000094_010 Hb_002529_080--Hb_000094_010 Hb_008040_060 Hb_008040_060 Hb_002529_080--Hb_008040_060 Hb_000098_250 Hb_000098_250 Hb_002529_080--Hb_000098_250 Hb_003914_050 Hb_003914_050 Hb_002529_080--Hb_003914_050 Hb_001568_120--Hb_117127_010 Hb_006698_020 Hb_006698_020 Hb_001568_120--Hb_006698_020 Hb_029866_050 Hb_029866_050 Hb_001568_120--Hb_029866_050 Hb_009683_010 Hb_009683_010 Hb_001568_120--Hb_009683_010 Hb_041145_010 Hb_041145_010 Hb_001568_120--Hb_041145_010 Hb_117127_010--Hb_000098_250 Hb_117127_010--Hb_008667_030 Hb_002410_010 Hb_002410_010 Hb_117127_010--Hb_002410_010 Hb_117127_010--Hb_002529_080 Hb_008667_030--Hb_000098_250 Hb_008667_030--Hb_006698_020 Hb_000338_030 Hb_000338_030 Hb_008667_030--Hb_000338_030 Hb_002968_010 Hb_002968_010 Hb_004122_020--Hb_002968_010 Hb_000656_370 Hb_000656_370 Hb_004122_020--Hb_000656_370 Hb_006052_040 Hb_006052_040 Hb_004122_020--Hb_006052_040 Hb_006198_060 Hb_006198_060 Hb_004122_020--Hb_006198_060 Hb_002475_010 Hb_002475_010 Hb_004122_020--Hb_002475_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.543008 173.684 40.2696 66.3467 0.382496 0.690092
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0643853 0.0506529 0 29.0851 20.6407

CAGE analysis