Hb_000000_080

Information

Type -
Description -
Location Contig0: 151558-153381
Sequence    

Annotation

kegg
ID rcu:RCOM_0251400
description lipoate-protein ligase B, putative
nr
ID XP_002529793.1
description lipoate-protein ligase B, putative [Ricinus communis]
swissprot
ID Q948J9
description Plastidial lipoyltransferase 2 OS=Arabidopsis thaliana GN=LIP2p PE=2 SV=1
trembl
ID B9SUW2
description Lipoate-protein ligase B, putative OS=Ricinus communis GN=RCOM_0251400 PE=3 SV=1
Gene Ontology
ID GO:0005737
description plastidial lipoyltransferase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00008: 151914-153370 , PASA_asmbl_00009: 154062-154414
cDNA
(Sanger)
(ID:Location)		 028_N21.ab1: 152070-153370

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000000_080 0.0 - - lipoate-protein ligase B, putative [Ricinus communis]
2 Hb_006065_020 0.0662234898 - - -
3 Hb_001439_150 0.0662305708 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
4 Hb_168707_030 0.0680216174 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
5 Hb_000030_010 0.0732071938 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
6 Hb_000017_120 0.0783431373 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
7 Hb_007951_060 0.0790120674 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
8 Hb_001006_170 0.0794572542 - - Endonuclease V, putative [Ricinus communis]
9 Hb_005662_030 0.0800153134 - - protein with unknown function [Ricinus communis]
10 Hb_010661_030 0.0818751576 - - hypothetical protein PHAVU_009G146200g [Phaseolus vulgaris]
11 Hb_002272_250 0.0820930588 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_002968_060 0.0825695938 - - PREDICTED: uncharacterized protein LOC105638042 [Jatropha curcas]
13 Hb_002685_140 0.083776479 - - PREDICTED: membrin-11 [Jatropha curcas]
14 Hb_012340_030 0.083974148 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
15 Hb_005306_110 0.0840126805 - - casein kinase, putative [Ricinus communis]
16 Hb_003642_060 0.084750584 - - hypothetical protein RCOM_1189860 [Ricinus communis]
17 Hb_000120_950 0.0853214317 - - PREDICTED: protein GRIP [Jatropha curcas]
18 Hb_001623_420 0.0853804751 - - nucleotide binding protein, putative [Ricinus communis]
19 Hb_000327_120 0.0854756786 - - FGFR1 oncogene partner, putative [Ricinus communis]
20 Hb_003609_040 0.0858128067 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]

Gene co-expression network

sample Hb_000000_080 Hb_000000_080 Hb_006065_020 Hb_006065_020 Hb_000000_080--Hb_006065_020 Hb_001439_150 Hb_001439_150 Hb_000000_080--Hb_001439_150 Hb_168707_030 Hb_168707_030 Hb_000000_080--Hb_168707_030 Hb_000030_010 Hb_000030_010 Hb_000000_080--Hb_000030_010 Hb_000017_120 Hb_000017_120 Hb_000000_080--Hb_000017_120 Hb_007951_060 Hb_007951_060 Hb_000000_080--Hb_007951_060 Hb_000392_300 Hb_000392_300 Hb_006065_020--Hb_000392_300 Hb_005662_030 Hb_005662_030 Hb_006065_020--Hb_005662_030 Hb_000089_220 Hb_000089_220 Hb_006065_020--Hb_000089_220 Hb_000721_010 Hb_000721_010 Hb_006065_020--Hb_000721_010 Hb_006185_050 Hb_006185_050 Hb_006065_020--Hb_006185_050 Hb_001439_150--Hb_007951_060 Hb_002685_140 Hb_002685_140 Hb_001439_150--Hb_002685_140 Hb_001511_020 Hb_001511_020 Hb_001439_150--Hb_001511_020 Hb_000327_120 Hb_000327_120 Hb_001439_150--Hb_000327_120 Hb_001439_150--Hb_168707_030 Hb_000057_040 Hb_000057_040 Hb_168707_030--Hb_000057_040 Hb_003642_060 Hb_003642_060 Hb_168707_030--Hb_003642_060 Hb_001006_170 Hb_001006_170 Hb_168707_030--Hb_001006_170 Hb_004195_160 Hb_004195_160 Hb_168707_030--Hb_004195_160 Hb_000120_950 Hb_000120_950 Hb_000030_010--Hb_000120_950 Hb_005062_070 Hb_005062_070 Hb_000030_010--Hb_005062_070 Hb_003609_040 Hb_003609_040 Hb_000030_010--Hb_003609_040 Hb_007547_010 Hb_007547_010 Hb_000030_010--Hb_007547_010 Hb_001623_420 Hb_001623_420 Hb_000030_010--Hb_001623_420 Hb_000030_010--Hb_000392_300 Hb_000017_120--Hb_001006_170 Hb_001030_120 Hb_001030_120 Hb_000017_120--Hb_001030_120 Hb_012340_030 Hb_012340_030 Hb_000017_120--Hb_012340_030 Hb_004223_130 Hb_004223_130 Hb_000017_120--Hb_004223_130 Hb_002631_050 Hb_002631_050 Hb_000017_120--Hb_002631_050 Hb_002272_250 Hb_002272_250 Hb_000017_120--Hb_002272_250 Hb_001305_010 Hb_001305_010 Hb_007951_060--Hb_001305_010 Hb_007951_060--Hb_000327_120 Hb_000926_280 Hb_000926_280 Hb_007951_060--Hb_000926_280 Hb_003417_020 Hb_003417_020 Hb_007951_060--Hb_003417_020 Hb_007576_040 Hb_007576_040 Hb_007951_060--Hb_007576_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0958 2.78749 3.24868 2.38622 7.40913 7.28643
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.59253 7.31465 7.07633 2.83686 1.85676

CAGE analysis