Hb_000000_120

Information

Type -
Description -
Location Contig0: 187269-206693
Sequence    

Annotation

kegg
ID rcu:RCOM_1593330
description exocyst complex component sec3, putative
nr
ID KCW88048.1
description hypothetical protein EUGRSUZ_A004731, partial [Eucalyptus grandis]
swissprot
ID Q9SX85
description Exocyst complex component SEC3A OS=Arabidopsis thaliana GN=SEC3A PE=1 SV=1
trembl
ID A0A059DC51
description Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_A004731 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00013: 194176-194293 , PASA_asmbl_00015: 202213-202587
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000000_120 0.0 - - hypothetical protein EUGRSUZ_A004731, partial [Eucalyptus grandis]
2 Hb_003506_020 0.0720286851 - - PREDICTED: uncharacterized protein LOC105125881 isoform X1 [Populus euphratica]
3 Hb_000220_080 0.0808524994 - - kinase, putative [Ricinus communis]
4 Hb_005970_010 0.093932732 - - PREDICTED: probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 isoform X2 [Jatropha curcas]
5 Hb_002072_010 0.1027491101 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002316_170 0.1029020901 - - purine permease, putative [Ricinus communis]
7 Hb_003125_180 0.1105750979 - - hypothetical protein JCGZ_26440 [Jatropha curcas]
8 Hb_028077_020 0.1112735351 - - conserved hypothetical protein [Ricinus communis]
9 Hb_030565_110 0.1132605437 - - PREDICTED: adenosylhomocysteinase 1 [Jatropha curcas]
10 Hb_000649_120 0.1143431201 - - ankyrin repeat-containing protein, putative [Ricinus communis]
11 Hb_005000_090 0.1151623178 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
12 Hb_000019_170 0.1155357119 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
13 Hb_169051_010 0.1163069238 - - JHL06B08.1 [Jatropha curcas]
14 Hb_006949_060 0.1215193886 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
15 Hb_000674_010 0.1222510905 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
16 Hb_002151_100 0.1228105082 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]
17 Hb_002851_010 0.1245767684 - - sugar transporter, putative [Ricinus communis]
18 Hb_135959_010 0.1251004953 - - hypothetical protein JCGZ_07060 [Jatropha curcas]
19 Hb_011032_010 0.1253074143 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
20 Hb_000157_070 0.125475311 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]

Gene co-expression network

sample Hb_000000_120 Hb_000000_120 Hb_003506_020 Hb_003506_020 Hb_000000_120--Hb_003506_020 Hb_000220_080 Hb_000220_080 Hb_000000_120--Hb_000220_080 Hb_005970_010 Hb_005970_010 Hb_000000_120--Hb_005970_010 Hb_002072_010 Hb_002072_010 Hb_000000_120--Hb_002072_010 Hb_002316_170 Hb_002316_170 Hb_000000_120--Hb_002316_170 Hb_003125_180 Hb_003125_180 Hb_000000_120--Hb_003125_180 Hb_000216_020 Hb_000216_020 Hb_003506_020--Hb_000216_020 Hb_003506_020--Hb_005970_010 Hb_002122_080 Hb_002122_080 Hb_003506_020--Hb_002122_080 Hb_002151_100 Hb_002151_100 Hb_003506_020--Hb_002151_100 Hb_028077_020 Hb_028077_020 Hb_003506_020--Hb_028077_020 Hb_000220_080--Hb_002316_170 Hb_000072_020 Hb_000072_020 Hb_000220_080--Hb_000072_020 Hb_001009_150 Hb_001009_150 Hb_000220_080--Hb_001009_150 Hb_000000_110 Hb_000000_110 Hb_000220_080--Hb_000000_110 Hb_006949_060 Hb_006949_060 Hb_000220_080--Hb_006949_060 Hb_001085_080 Hb_001085_080 Hb_005970_010--Hb_001085_080 Hb_012180_010 Hb_012180_010 Hb_005970_010--Hb_012180_010 Hb_001097_040 Hb_001097_040 Hb_005970_010--Hb_001097_040 Hb_005970_010--Hb_028077_020 Hb_030565_110 Hb_030565_110 Hb_002072_010--Hb_030565_110 Hb_003058_200 Hb_003058_200 Hb_002072_010--Hb_003058_200 Hb_000674_010 Hb_000674_010 Hb_002072_010--Hb_000674_010 Hb_000244_260 Hb_000244_260 Hb_002072_010--Hb_000244_260 Hb_005000_090 Hb_005000_090 Hb_002072_010--Hb_005000_090 Hb_000019_170 Hb_000019_170 Hb_002072_010--Hb_000019_170 Hb_002316_170--Hb_006949_060 Hb_010407_030 Hb_010407_030 Hb_002316_170--Hb_010407_030 Hb_002316_170--Hb_001009_150 Hb_005772_030 Hb_005772_030 Hb_002316_170--Hb_005772_030 Hb_011032_010 Hb_011032_010 Hb_003125_180--Hb_011032_010 Hb_169051_010 Hb_169051_010 Hb_003125_180--Hb_169051_010 Hb_003125_180--Hb_000019_170 Hb_029879_120 Hb_029879_120 Hb_003125_180--Hb_029879_120 Hb_003125_180--Hb_000674_010 Hb_003125_180--Hb_003058_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.313487 1.6649 0.746797 2.28134 0.5212 0.537296
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.283454 0.173445 0.232696 1.95848 1.03641

CAGE analysis