Hb_000000_160

Information

Type -
Description -
Location Contig0: 266548-270053
Sequence    

Annotation

kegg
ID rcu:RCOM_1321740
description membrin, putative
nr
ID XP_012070403.1
description PREDICTED: membrin-11 [Jatropha curcas]
swissprot
ID Q9SJL6
description Membrin-11 OS=Arabidopsis thaliana GN=MEMB11 PE=1 SV=1
trembl
ID A0A067KU39
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02682 PE=4 SV=1
Gene Ontology
ID GO:0005794
description cis-golgi snare protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00037: 266550-269989
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000000_160 0.0 - - PREDICTED: membrin-11 [Jatropha curcas]
2 Hb_002007_060 0.0628445161 - - hypothetical protein JCGZ_23323 [Jatropha curcas]
3 Hb_023226_040 0.0663889583 - - PREDICTED: kxDL motif-containing protein 1 [Jatropha curcas]
4 Hb_000661_250 0.0665389682 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
5 Hb_011360_140 0.0700342595 - - 40S ribosomal protein S19, putative [Ricinus communis]
6 Hb_000494_020 0.0717277819 - - PREDICTED: actin-related protein 2/3 complex subunit 5A [Jatropha curcas]
7 Hb_010407_040 0.0721562589 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
8 Hb_000163_160 0.0731751374 - - Putative small nuclear ribonucleoprotein Sm D2 [Glycine soja]
9 Hb_002233_150 0.0733440567 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
10 Hb_002868_010 0.07370932 - - 60S ribosomal protein L30, putative [Ricinus communis]
11 Hb_001635_170 0.0754151648 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
12 Hb_086639_070 0.0754262298 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
13 Hb_001259_090 0.0763288084 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
14 Hb_000933_180 0.0764540697 - - PREDICTED: chorismate mutase 3, chloroplastic [Jatropha curcas]
15 Hb_007919_060 0.0788539046 - - PREDICTED: UPF0047 protein C4A8.02c [Jatropha curcas]
16 Hb_000866_270 0.0800019875 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
17 Hb_010661_030 0.0803339385 - - hypothetical protein PHAVU_009G146200g [Phaseolus vulgaris]
18 Hb_145880_030 0.0810721416 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
19 Hb_003939_080 0.0828168065 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003363_110 0.0840831393 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_000000_160 Hb_000000_160 Hb_002007_060 Hb_002007_060 Hb_000000_160--Hb_002007_060 Hb_023226_040 Hb_023226_040 Hb_000000_160--Hb_023226_040 Hb_000661_250 Hb_000661_250 Hb_000000_160--Hb_000661_250 Hb_011360_140 Hb_011360_140 Hb_000000_160--Hb_011360_140 Hb_000494_020 Hb_000494_020 Hb_000000_160--Hb_000494_020 Hb_010407_040 Hb_010407_040 Hb_000000_160--Hb_010407_040 Hb_002007_060--Hb_023226_040 Hb_000866_270 Hb_000866_270 Hb_002007_060--Hb_000866_270 Hb_001259_090 Hb_001259_090 Hb_002007_060--Hb_001259_090 Hb_001301_160 Hb_001301_160 Hb_002007_060--Hb_001301_160 Hb_005539_350 Hb_005539_350 Hb_002007_060--Hb_005539_350 Hb_023226_040--Hb_000866_270 Hb_000023_230 Hb_000023_230 Hb_023226_040--Hb_000023_230 Hb_004657_050 Hb_004657_050 Hb_023226_040--Hb_004657_050 Hb_028995_040 Hb_028995_040 Hb_023226_040--Hb_028995_040 Hb_000661_250--Hb_001259_090 Hb_096563_010 Hb_096563_010 Hb_000661_250--Hb_096563_010 Hb_000462_140 Hb_000462_140 Hb_000661_250--Hb_000462_140 Hb_001635_170 Hb_001635_170 Hb_000661_250--Hb_001635_170 Hb_000661_250--Hb_002007_060 Hb_002233_150 Hb_002233_150 Hb_000661_250--Hb_002233_150 Hb_000473_040 Hb_000473_040 Hb_011360_140--Hb_000473_040 Hb_011571_020 Hb_011571_020 Hb_011360_140--Hb_011571_020 Hb_000933_180 Hb_000933_180 Hb_011360_140--Hb_000933_180 Hb_000392_440 Hb_000392_440 Hb_011360_140--Hb_000392_440 Hb_001828_090 Hb_001828_090 Hb_011360_140--Hb_001828_090 Hb_005993_040 Hb_005993_040 Hb_011360_140--Hb_005993_040 Hb_000494_020--Hb_010407_040 Hb_002105_090 Hb_002105_090 Hb_000494_020--Hb_002105_090 Hb_003363_110 Hb_003363_110 Hb_000494_020--Hb_003363_110 Hb_000494_020--Hb_000933_180 Hb_000163_160 Hb_000163_160 Hb_000494_020--Hb_000163_160 Hb_001246_090 Hb_001246_090 Hb_000494_020--Hb_001246_090 Hb_010407_040--Hb_000163_160 Hb_145880_030 Hb_145880_030 Hb_010407_040--Hb_145880_030 Hb_010407_040--Hb_003363_110 Hb_007778_030 Hb_007778_030 Hb_010407_040--Hb_007778_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.6011 8.89912 9.68996 6.91498 14.3045 18.3169
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.8495 22.492 9.78731 5.63174 3.15866

CAGE analysis