Hb_000000_170

Information

Type -
Description -
Location Contig0: 272151-276382
Sequence    

Annotation

kegg
ID rcu:RCOM_0534850
description defender against cell death, putative (EC:2.4.1.119)
nr
ID XP_002521538.1
description defender against cell death, putative [Ricinus communis]
swissprot
ID Q9ZWQ7
description Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Citrus unshiu GN=DAD1 PE=3 SV=1
trembl
ID B9S6B9
description Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Ricinus communis GN=RCOM_0534850 PE=3 SV=1
Gene Ontology
ID GO:0008250
description dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit dad1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00039: 272237-276322
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000000_170 0.0 - - defender against cell death, putative [Ricinus communis]
2 Hb_000505_140 0.0622339964 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Populus euphratica]
3 Hb_128048_010 0.0623729523 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
4 Hb_012022_120 0.068954333 - - PREDICTED: protein N-methyltransferase NNT1 isoform X2 [Jatropha curcas]
5 Hb_001184_090 0.0730855012 - - PREDICTED: TIP41-like protein [Jatropha curcas]
6 Hb_000926_300 0.0738828056 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
7 Hb_002900_160 0.0746418422 - - PREDICTED: immediate early response 3-interacting protein 1-like [Jatropha curcas]
8 Hb_012573_070 0.0802575298 - - conserved hypothetical protein [Ricinus communis]
9 Hb_182305_020 0.0807452604 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Jatropha curcas]
10 Hb_003528_060 0.0819573913 - - PREDICTED: uncharacterized protein LOC105638256 isoform X2 [Jatropha curcas]
11 Hb_004157_030 0.0852669859 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
12 Hb_032202_090 0.0860121433 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
13 Hb_003927_140 0.0878339782 - - PREDICTED: nudix hydrolase 9 isoform X1 [Jatropha curcas]
14 Hb_001016_030 0.08799792 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
15 Hb_009793_010 0.0881728531 - - hypothetical protein JCGZ_17222 [Jatropha curcas]
16 Hb_002811_260 0.088491589 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
17 Hb_000007_100 0.0888602175 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
18 Hb_156635_030 0.0890595209 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial isoform X1 [Nelumbo nucifera]
19 Hb_007012_060 0.0897901103 - - PREDICTED: UPF0183 protein At3g51130 isoform X2 [Jatropha curcas]
20 Hb_001279_310 0.0899176566 - - hypothetical protein JCGZ_10212 [Jatropha curcas]

Gene co-expression network

sample Hb_000000_170 Hb_000000_170 Hb_000505_140 Hb_000505_140 Hb_000000_170--Hb_000505_140 Hb_128048_010 Hb_128048_010 Hb_000000_170--Hb_128048_010 Hb_012022_120 Hb_012022_120 Hb_000000_170--Hb_012022_120 Hb_001184_090 Hb_001184_090 Hb_000000_170--Hb_001184_090 Hb_000926_300 Hb_000926_300 Hb_000000_170--Hb_000926_300 Hb_002900_160 Hb_002900_160 Hb_000000_170--Hb_002900_160 Hb_000505_140--Hb_012022_120 Hb_032202_090 Hb_032202_090 Hb_000505_140--Hb_032202_090 Hb_004502_020 Hb_004502_020 Hb_000505_140--Hb_004502_020 Hb_000086_550 Hb_000086_550 Hb_000505_140--Hb_000086_550 Hb_000505_140--Hb_000926_300 Hb_128048_010--Hb_000926_300 Hb_002811_260 Hb_002811_260 Hb_128048_010--Hb_002811_260 Hb_175215_010 Hb_175215_010 Hb_128048_010--Hb_175215_010 Hb_003878_010 Hb_003878_010 Hb_128048_010--Hb_003878_010 Hb_181288_010 Hb_181288_010 Hb_128048_010--Hb_181288_010 Hb_002830_020 Hb_002830_020 Hb_012022_120--Hb_002830_020 Hb_012022_120--Hb_032202_090 Hb_000995_040 Hb_000995_040 Hb_012022_120--Hb_000995_040 Hb_005278_020 Hb_005278_020 Hb_012022_120--Hb_005278_020 Hb_002105_090 Hb_002105_090 Hb_001184_090--Hb_002105_090 Hb_000494_020 Hb_000494_020 Hb_001184_090--Hb_000494_020 Hb_004800_230 Hb_004800_230 Hb_001184_090--Hb_004800_230 Hb_000832_140 Hb_000832_140 Hb_001184_090--Hb_000832_140 Hb_000454_050 Hb_000454_050 Hb_001184_090--Hb_000454_050 Hb_000007_100 Hb_000007_100 Hb_000926_300--Hb_000007_100 Hb_003599_040 Hb_003599_040 Hb_000926_300--Hb_003599_040 Hb_012573_070 Hb_012573_070 Hb_000926_300--Hb_012573_070 Hb_002284_240 Hb_002284_240 Hb_000926_300--Hb_002284_240 Hb_000307_090 Hb_000307_090 Hb_000926_300--Hb_000307_090 Hb_002783_270 Hb_002783_270 Hb_002900_160--Hb_002783_270 Hb_003018_020 Hb_003018_020 Hb_002900_160--Hb_003018_020 Hb_004052_020 Hb_004052_020 Hb_002900_160--Hb_004052_020 Hb_000699_160 Hb_000699_160 Hb_002900_160--Hb_000699_160 Hb_007044_130 Hb_007044_130 Hb_002900_160--Hb_007044_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.4036 8.0795 30.5955 33.0833 41.5784 46.9994
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.3307 97.3746 32.3967 28.148 12.1236

CAGE analysis