Hb_000000_200

Information

Type -
Description -
Location Contig0: 408029-411181
Sequence    

Annotation

kegg
ID rcu:RCOM_1593370
description multidrug resistance pump, putative
nr
ID XP_012071762.1
description PREDICTED: protein TRANSPARENT TESTA 12 [Jatropha curcas]
swissprot
ID Q9LYT3
description Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1
trembl
ID A0A067KQN7
description MATE efflux family protein OS=Jatropha curcas GN=JCGZ_04377 PE=3 SV=1
Gene Ontology
ID GO:0016020
description protein transparent testa 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00045: 408349-409919 , PASA_asmbl_00046: 410247-411046
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000000_200 0.0 - - PREDICTED: protein TRANSPARENT TESTA 12 [Jatropha curcas]
2 Hb_000609_020 0.0544508639 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
3 Hb_010334_050 0.0742969618 - - conserved hypothetical protein [Ricinus communis]
4 Hb_008376_020 0.0883760348 - - hypothetical protein JCGZ_03321 [Jatropha curcas]
5 Hb_000847_120 0.1007307738 - - hypothetical protein JCGZ_15115 [Jatropha curcas]
6 Hb_000645_250 0.1096859297 - - PREDICTED: putative beta-D-xylosidase [Jatropha curcas]
7 Hb_099157_010 0.1100826913 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]
8 Hb_000836_260 0.1216883699 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
9 Hb_168319_060 0.1222528899 - - PREDICTED: cytochrome P450 CYP749A22-like [Populus euphratica]
10 Hb_116190_010 0.1324781818 - - PREDICTED: uncharacterized protein LOC105118535 [Populus euphratica]
11 Hb_007875_020 0.1376600342 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
12 Hb_005663_090 0.1416049075 - - PREDICTED: alcohol dehydrogenase-like 7 [Jatropha curcas]
13 Hb_000373_060 0.14264516 - - PREDICTED: extensin-3 [Camelina sativa]
14 Hb_000751_060 0.1451435079 - - PREDICTED: extensin-2-like, partial [Sesamum indicum]
15 Hb_003160_050 0.1465491479 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
16 Hb_029510_090 0.1478023262 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
17 Hb_019278_010 0.1481661519 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
18 Hb_060152_010 0.1487047484 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
19 Hb_015978_010 0.1491576129 - - PREDICTED: probable beta-D-xylosidase 2 [Populus euphratica]
20 Hb_001040_200 0.1526355171 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000000_200 Hb_000000_200 Hb_000609_020 Hb_000609_020 Hb_000000_200--Hb_000609_020 Hb_010334_050 Hb_010334_050 Hb_000000_200--Hb_010334_050 Hb_008376_020 Hb_008376_020 Hb_000000_200--Hb_008376_020 Hb_000847_120 Hb_000847_120 Hb_000000_200--Hb_000847_120 Hb_000645_250 Hb_000645_250 Hb_000000_200--Hb_000645_250 Hb_099157_010 Hb_099157_010 Hb_000000_200--Hb_099157_010 Hb_000609_020--Hb_008376_020 Hb_000609_020--Hb_000847_120 Hb_000609_020--Hb_010334_050 Hb_000609_020--Hb_000645_250 Hb_000609_020--Hb_099157_010 Hb_116190_010 Hb_116190_010 Hb_010334_050--Hb_116190_010 Hb_000373_060 Hb_000373_060 Hb_010334_050--Hb_000373_060 Hb_003861_090 Hb_003861_090 Hb_010334_050--Hb_003861_090 Hb_010334_050--Hb_008376_020 Hb_008376_020--Hb_000847_120 Hb_001004_130 Hb_001004_130 Hb_008376_020--Hb_001004_130 Hb_008376_020--Hb_000645_250 Hb_006573_250 Hb_006573_250 Hb_008376_020--Hb_006573_250 Hb_000836_260 Hb_000836_260 Hb_000847_120--Hb_000836_260 Hb_000847_120--Hb_000645_250 Hb_000751_070 Hb_000751_070 Hb_000847_120--Hb_000751_070 Hb_000751_060 Hb_000751_060 Hb_000645_250--Hb_000751_060 Hb_060152_010 Hb_060152_010 Hb_000645_250--Hb_060152_010 Hb_000645_250--Hb_000751_070 Hb_099157_010--Hb_008376_020 Hb_099157_010--Hb_000847_120 Hb_099157_010--Hb_000645_250 Hb_099157_010--Hb_000836_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.553947 4.2272 5.72589 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0476195 0 0.0354779 10.1336 4.50684

CAGE analysis