Hb_000000_210

Information

Type -
Description -
Location Contig0: 418021-431667
Sequence    

Annotation

kegg
ID rcu:RCOM_1593380
description ubiquitin-protein ligase, putative
nr
ID XP_012071763.1
description PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like isoform X1 [Jatropha curcas]
swissprot
ID Q9FZ70
description F-box/FBD/LRR-repeat protein At1g13570 OS=Arabidopsis thaliana GN=At1g13570 PE=2 SV=1
trembl
ID A0A067KTZ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04378 PE=4 SV=1
Gene Ontology
ID GO:0016874
description f-box fbd lrr-repeat protein at1g13570-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00048: 418454-418763 , PASA_asmbl_00049: 419221-419840 , PASA_asmbl_00050: 428470-428634 , PASA_asmbl_00052: 430711-431060
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000000_210 0.0 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like isoform X1 [Jatropha curcas]
2 Hb_180424_010 0.0790475379 - - Charged multivesicular body protein, putative [Ricinus communis]
3 Hb_048476_110 0.0867267226 - - PREDICTED: adagio protein 3 [Jatropha curcas]
4 Hb_011519_010 0.0902365447 - - PREDICTED: uncharacterized protein LOC105645310 [Jatropha curcas]
5 Hb_000853_430 0.0921116175 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
6 Hb_004934_030 0.0936574948 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]
7 Hb_004678_040 0.0976720914 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
8 Hb_000694_040 0.0997833337 - - Uncharacterized protein isoform 1 [Theobroma cacao]
9 Hb_000622_180 0.1021477305 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
10 Hb_002374_570 0.1028852358 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
11 Hb_001195_480 0.103521031 - - cop9 complex subunit, putative [Ricinus communis]
12 Hb_000362_200 0.1043892177 - - exonuclease family protein [Populus trichocarpa]
13 Hb_010560_020 0.1043937068 - - PREDICTED: uncharacterized protein LOC105649267 [Jatropha curcas]
14 Hb_000649_230 0.1045872996 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
15 Hb_000771_120 0.1049836116 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
16 Hb_004453_170 0.1054772478 - - hypothetical protein POPTR_0018s01370g [Populus trichocarpa]
17 Hb_000302_270 0.1058304529 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
18 Hb_002685_040 0.106664283 - - hypothetical protein CICLE_v10017252mg [Citrus clementina]
19 Hb_001012_010 0.106834572 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
20 Hb_006817_010 0.1073108997 - - PREDICTED: serine/threonine-protein kinase CTR1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000000_210 Hb_000000_210 Hb_180424_010 Hb_180424_010 Hb_000000_210--Hb_180424_010 Hb_048476_110 Hb_048476_110 Hb_000000_210--Hb_048476_110 Hb_011519_010 Hb_011519_010 Hb_000000_210--Hb_011519_010 Hb_000853_430 Hb_000853_430 Hb_000000_210--Hb_000853_430 Hb_004934_030 Hb_004934_030 Hb_000000_210--Hb_004934_030 Hb_004678_040 Hb_004678_040 Hb_000000_210--Hb_004678_040 Hb_180424_010--Hb_000853_430 Hb_005488_140 Hb_005488_140 Hb_180424_010--Hb_005488_140 Hb_000856_380 Hb_000856_380 Hb_180424_010--Hb_000856_380 Hb_004410_080 Hb_004410_080 Hb_180424_010--Hb_004410_080 Hb_180424_010--Hb_004678_040 Hb_000059_360 Hb_000059_360 Hb_048476_110--Hb_000059_360 Hb_003813_030 Hb_003813_030 Hb_048476_110--Hb_003813_030 Hb_007044_120 Hb_007044_120 Hb_048476_110--Hb_007044_120 Hb_001277_070 Hb_001277_070 Hb_048476_110--Hb_001277_070 Hb_000580_090 Hb_000580_090 Hb_048476_110--Hb_000580_090 Hb_004162_130 Hb_004162_130 Hb_011519_010--Hb_004162_130 Hb_032202_140 Hb_032202_140 Hb_011519_010--Hb_032202_140 Hb_002600_020 Hb_002600_020 Hb_011519_010--Hb_002600_020 Hb_000917_060 Hb_000917_060 Hb_011519_010--Hb_000917_060 Hb_000465_160 Hb_000465_160 Hb_011519_010--Hb_000465_160 Hb_011519_010--Hb_004410_080 Hb_001305_010 Hb_001305_010 Hb_000853_430--Hb_001305_010 Hb_000853_430--Hb_004678_040 Hb_004093_090 Hb_004093_090 Hb_000853_430--Hb_004093_090 Hb_000008_470 Hb_000008_470 Hb_000853_430--Hb_000008_470 Hb_012389_020 Hb_012389_020 Hb_000853_430--Hb_012389_020 Hb_000302_270 Hb_000302_270 Hb_000853_430--Hb_000302_270 Hb_000694_040 Hb_000694_040 Hb_004934_030--Hb_000694_040 Hb_003607_150 Hb_003607_150 Hb_004934_030--Hb_003607_150 Hb_005186_050 Hb_005186_050 Hb_004934_030--Hb_005186_050 Hb_000331_250 Hb_000331_250 Hb_004934_030--Hb_000331_250 Hb_001998_120 Hb_001998_120 Hb_004934_030--Hb_001998_120 Hb_004678_040--Hb_000008_470 Hb_000521_320 Hb_000521_320 Hb_004678_040--Hb_000521_320 Hb_004678_040--Hb_000302_270 Hb_025645_010 Hb_025645_010 Hb_004678_040--Hb_025645_010 Hb_002256_030 Hb_002256_030 Hb_004678_040--Hb_002256_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.1769 6.42864 18.4141 7.72439 7.94874 8.42127
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8066 15.54 13.8919 5.56556 4.43435

CAGE analysis