Hb_000000_250

Information

Type -
Description -
Location Contig0: 458094-463600
Sequence    

Annotation

kegg
ID rcu:RCOM_1593430
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012071770.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At1g19290 [Jatropha curcas]
swissprot
ID Q9LN69
description Putative pentatricopeptide repeat-containing protein At1g19290 OS=Arabidopsis thaliana GN=At1g19290 PE=3 SV=2
trembl
ID A0A067KTZ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04383 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at1g19290

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00057: 458194-458669 , PASA_asmbl_00058: 458774-459064 , PASA_asmbl_00059: 459341-460811 , PASA_asmbl_00060: 461086-462368 , PASA_asmbl_00061: 461086-461372 , PASA_asmbl_00062: 460821-461180
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000000_250 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g19290 [Jatropha curcas]
2 Hb_154648_010 0.060443711 - - PREDICTED: uncharacterized protein LOC105634412 isoform X2 [Jatropha curcas]
3 Hb_000086_400 0.0624102575 - - calmodulin binding protein, putative [Ricinus communis]
4 Hb_006922_110 0.0728050089 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
5 Hb_001898_220 0.0749345505 - - PREDICTED: regulator of nonsense transcripts UPF3-like isoform X1 [Jatropha curcas]
6 Hb_189003_080 0.0753854487 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
7 Hb_003996_020 0.0754560359 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_004976_030 0.077352624 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
9 Hb_085863_030 0.0797060909 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Jatropha curcas]
10 Hb_002026_180 0.0813210271 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
11 Hb_000007_150 0.0815441339 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41080 [Jatropha curcas]
12 Hb_008695_210 0.0832708691 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
13 Hb_034585_060 0.0834613576 - - PREDICTED: pentatricopeptide repeat-containing protein At3g50420 [Jatropha curcas]
14 Hb_001258_040 0.0838730648 - - hypothetical protein JCGZ_12578 [Jatropha curcas]
15 Hb_002678_020 0.0843002427 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090-like [Jatropha curcas]
16 Hb_000207_250 0.0845236874 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
17 Hb_016901_010 0.0849890535 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
18 Hb_005289_030 0.085737545 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
19 Hb_040575_010 0.0863077831 - - PREDICTED: uncharacterized protein LOC105637675 [Jatropha curcas]
20 Hb_000805_020 0.0863978444 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000000_250 Hb_000000_250 Hb_154648_010 Hb_154648_010 Hb_000000_250--Hb_154648_010 Hb_000086_400 Hb_000086_400 Hb_000000_250--Hb_000086_400 Hb_006922_110 Hb_006922_110 Hb_000000_250--Hb_006922_110 Hb_001898_220 Hb_001898_220 Hb_000000_250--Hb_001898_220 Hb_189003_080 Hb_189003_080 Hb_000000_250--Hb_189003_080 Hb_003996_020 Hb_003996_020 Hb_000000_250--Hb_003996_020 Hb_154648_010--Hb_006922_110 Hb_154648_010--Hb_003996_020 Hb_004976_030 Hb_004976_030 Hb_154648_010--Hb_004976_030 Hb_003018_190 Hb_003018_190 Hb_154648_010--Hb_003018_190 Hb_006816_140 Hb_006816_140 Hb_154648_010--Hb_006816_140 Hb_085863_030 Hb_085863_030 Hb_000086_400--Hb_085863_030 Hb_000510_320 Hb_000510_320 Hb_000086_400--Hb_000510_320 Hb_009178_030 Hb_009178_030 Hb_000086_400--Hb_009178_030 Hb_000175_460 Hb_000175_460 Hb_000086_400--Hb_000175_460 Hb_000876_070 Hb_000876_070 Hb_000086_400--Hb_000876_070 Hb_006922_110--Hb_003996_020 Hb_029584_130 Hb_029584_130 Hb_006922_110--Hb_029584_130 Hb_000200_050 Hb_000200_050 Hb_006922_110--Hb_000200_050 Hb_003266_130 Hb_003266_130 Hb_006922_110--Hb_003266_130 Hb_001635_060 Hb_001635_060 Hb_001898_220--Hb_001635_060 Hb_093084_050 Hb_093084_050 Hb_001898_220--Hb_093084_050 Hb_001898_220--Hb_189003_080 Hb_002026_180 Hb_002026_180 Hb_001898_220--Hb_002026_180 Hb_000041_050 Hb_000041_050 Hb_001898_220--Hb_000041_050 Hb_000567_260 Hb_000567_260 Hb_189003_080--Hb_000567_260 Hb_008695_210 Hb_008695_210 Hb_189003_080--Hb_008695_210 Hb_002016_110 Hb_002016_110 Hb_189003_080--Hb_002016_110 Hb_001671_020 Hb_001671_020 Hb_189003_080--Hb_001671_020 Hb_189003_080--Hb_002026_180 Hb_001248_130 Hb_001248_130 Hb_189003_080--Hb_001248_130 Hb_002759_060 Hb_002759_060 Hb_003996_020--Hb_002759_060 Hb_061090_010 Hb_061090_010 Hb_003996_020--Hb_061090_010 Hb_001242_110 Hb_001242_110 Hb_003996_020--Hb_001242_110 Hb_033834_040 Hb_033834_040 Hb_003996_020--Hb_033834_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.26591 4.5289 2.27049 3.72286 5.00651 10.3037
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.46388 9.09942 12.0071 4.3719 3.68725

CAGE analysis