Hb_000000_330

Information

Type -
Description -
Location Contig0: 582607-585993
Sequence    

Annotation

kegg
ID rcu:RCOM_1593720
description hypothetical protein
nr
ID XP_012071778.1
description PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L1V1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04390 PE=4 SV=1
Gene Ontology
ID GO:0005515
description histone deacetylase complex subunit sap30

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00080: 582619-585976 , PASA_asmbl_00081: 582651-585953
cDNA
(Sanger)
(ID:Location)		 040_O01.ab1: 583352-585953

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000000_330 0.0 - - PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]
2 Hb_074399_010 0.086254065 - - PREDICTED: phragmoplast orienting kinesin-1 isoform X1 [Populus euphratica]
3 Hb_006775_120 0.0892824509 - - exonuclease-like protein [Oryza sativa Japonica Group]
4 Hb_164010_050 0.1036542017 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
5 Hb_000003_030 0.1052534439 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_002783_220 0.1078960579 - - PREDICTED: uncharacterized protein LOC105635342 isoform X1 [Jatropha curcas]
7 Hb_003540_050 0.1080757944 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X4 [Jatropha curcas]
8 Hb_000258_220 0.1091849678 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
9 Hb_000072_300 0.1115085579 - - PREDICTED: probable galacturonosyltransferase 9 [Jatropha curcas]
10 Hb_000331_140 0.1125581419 - - PREDICTED: cycloeucalenol cycloisomerase [Jatropha curcas]
11 Hb_005754_040 0.1141852253 - - PREDICTED: uncharacterized protein LOC105636678 isoform X2 [Jatropha curcas]
12 Hb_004228_120 0.1160352004 - - hypothetical protein POPTR_0013s02080g [Populus trichocarpa]
13 Hb_008725_270 0.1162806798 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
14 Hb_000926_060 0.1181167402 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006588_160 0.1190055505 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X2 [Jatropha curcas]
16 Hb_011716_010 0.1192979005 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
17 Hb_004013_030 0.1194338775 - - Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, putative [Ricinus communis]
18 Hb_004032_210 0.1206954414 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004125_010 0.1208717175 - - PREDICTED: uncharacterized protein LOC105632163 [Jatropha curcas]
20 Hb_007786_030 0.1213192487 - - PREDICTED: ribonucleoside-diphosphate reductase large subunit [Jatropha curcas]

Gene co-expression network

sample Hb_000000_330 Hb_000000_330 Hb_074399_010 Hb_074399_010 Hb_000000_330--Hb_074399_010 Hb_006775_120 Hb_006775_120 Hb_000000_330--Hb_006775_120 Hb_164010_050 Hb_164010_050 Hb_000000_330--Hb_164010_050 Hb_000003_030 Hb_000003_030 Hb_000000_330--Hb_000003_030 Hb_002783_220 Hb_002783_220 Hb_000000_330--Hb_002783_220 Hb_003540_050 Hb_003540_050 Hb_000000_330--Hb_003540_050 Hb_000703_160 Hb_000703_160 Hb_074399_010--Hb_000703_160 Hb_029584_120 Hb_029584_120 Hb_074399_010--Hb_029584_120 Hb_000258_220 Hb_000258_220 Hb_074399_010--Hb_000258_220 Hb_003687_080 Hb_003687_080 Hb_074399_010--Hb_003687_080 Hb_007919_110 Hb_007919_110 Hb_074399_010--Hb_007919_110 Hb_004013_030 Hb_004013_030 Hb_074399_010--Hb_004013_030 Hb_000926_060 Hb_000926_060 Hb_006775_120--Hb_000926_060 Hb_005754_040 Hb_005754_040 Hb_006775_120--Hb_005754_040 Hb_000364_170 Hb_000364_170 Hb_006775_120--Hb_000364_170 Hb_000395_280 Hb_000395_280 Hb_006775_120--Hb_000395_280 Hb_006775_120--Hb_002783_220 Hb_051257_010 Hb_051257_010 Hb_164010_050--Hb_051257_010 Hb_000866_070 Hb_000866_070 Hb_164010_050--Hb_000866_070 Hb_164010_050--Hb_000258_220 Hb_164010_050--Hb_074399_010 Hb_000503_020 Hb_000503_020 Hb_164010_050--Hb_000503_020 Hb_001545_130 Hb_001545_130 Hb_000003_030--Hb_001545_130 Hb_019654_060 Hb_019654_060 Hb_000003_030--Hb_019654_060 Hb_003430_080 Hb_003430_080 Hb_000003_030--Hb_003430_080 Hb_004032_210 Hb_004032_210 Hb_000003_030--Hb_004032_210 Hb_000581_030 Hb_000581_030 Hb_000003_030--Hb_000581_030 Hb_002783_220--Hb_000364_170 Hb_005333_060 Hb_005333_060 Hb_002783_220--Hb_005333_060 Hb_019654_050 Hb_019654_050 Hb_002783_220--Hb_019654_050 Hb_000987_040 Hb_000987_040 Hb_002783_220--Hb_000987_040 Hb_000072_300 Hb_000072_300 Hb_003540_050--Hb_000072_300 Hb_002686_080 Hb_002686_080 Hb_003540_050--Hb_002686_080 Hb_005064_010 Hb_005064_010 Hb_003540_050--Hb_005064_010 Hb_001053_190 Hb_001053_190 Hb_003540_050--Hb_001053_190 Hb_001279_190 Hb_001279_190 Hb_003540_050--Hb_001279_190 Hb_002740_080 Hb_002740_080 Hb_003540_050--Hb_002740_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.8808 11.4329 55.0353 46.6314 9.31231 15.1486
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3487 6.29802 10.1418 24.1724 20.0967

CAGE analysis