Hb_000000_360

Information

Type -
Description -
Location Contig0: 632836-636930
Sequence    

Annotation

kegg
ID cic:CICLE_v10001360mg
description hypothetical protein
nr
ID XP_011031456.1
description PREDICTED: methyltransferase-like protein 2 [Populus euphratica]
swissprot
ID Q8LFA9
description Methyltransferase-like protein 2 OS=Arabidopsis thaliana GN=At1g19340 PE=2 SV=2
trembl
ID V4T9L5
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001360mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description methyltransferase-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00087: 633054-633402 , PASA_asmbl_00088: 633624-634004 , PASA_asmbl_00089: 634056-635444 , PASA_asmbl_00090: 635663-635899 , PASA_asmbl_00091: 636125-636501
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000000_360 0.0 - - PREDICTED: methyltransferase-like protein 2 [Populus euphratica]
2 Hb_140833_010 0.0864225505 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
3 Hb_000694_040 0.0871975165 - - Uncharacterized protein isoform 1 [Theobroma cacao]
4 Hb_001579_230 0.0889366499 - - PREDICTED: uncharacterized protein LOC105644968 [Jatropha curcas]
5 Hb_005588_030 0.0892460478 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]
6 Hb_010315_060 0.0894576581 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
7 Hb_002820_110 0.0915782419 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
8 Hb_004934_030 0.0958377368 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]
9 Hb_000836_170 0.1003709474 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
10 Hb_007477_070 0.1010064427 - - hypothetical protein JCGZ_17593 [Jatropha curcas]
11 Hb_000510_330 0.1014360457 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
12 Hb_073973_130 0.1016200235 - - PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1 [Jatropha curcas]
13 Hb_002477_300 0.1016808998 - - transcription factor, putative [Ricinus communis]
14 Hb_000331_250 0.1030999774 - - PREDICTED: mitochondrial pyruvate carrier 1 [Vitis vinifera]
15 Hb_000107_030 0.103403219 - - conserved hypothetical protein [Ricinus communis]
16 Hb_058972_010 0.1036002264 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
17 Hb_004449_170 0.1037160313 - - PREDICTED: uncharacterized protein LOC105631285 isoform X1 [Jatropha curcas]
18 Hb_000392_230 0.1041378933 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000286_070 0.104632307 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
20 Hb_001012_010 0.105085087 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000000_360 Hb_000000_360 Hb_140833_010 Hb_140833_010 Hb_000000_360--Hb_140833_010 Hb_000694_040 Hb_000694_040 Hb_000000_360--Hb_000694_040 Hb_001579_230 Hb_001579_230 Hb_000000_360--Hb_001579_230 Hb_005588_030 Hb_005588_030 Hb_000000_360--Hb_005588_030 Hb_010315_060 Hb_010315_060 Hb_000000_360--Hb_010315_060 Hb_002820_110 Hb_002820_110 Hb_000000_360--Hb_002820_110 Hb_001373_110 Hb_001373_110 Hb_140833_010--Hb_001373_110 Hb_000661_140 Hb_000661_140 Hb_140833_010--Hb_000661_140 Hb_140833_010--Hb_005588_030 Hb_140833_010--Hb_000694_040 Hb_011013_010 Hb_011013_010 Hb_140833_010--Hb_011013_010 Hb_004934_030 Hb_004934_030 Hb_000694_040--Hb_004934_030 Hb_007477_070 Hb_007477_070 Hb_000694_040--Hb_007477_070 Hb_002374_170 Hb_002374_170 Hb_000694_040--Hb_002374_170 Hb_000000_210 Hb_000000_210 Hb_000694_040--Hb_000000_210 Hb_004787_060 Hb_004787_060 Hb_000694_040--Hb_004787_060 Hb_002918_030 Hb_002918_030 Hb_001579_230--Hb_002918_030 Hb_004122_040 Hb_004122_040 Hb_001579_230--Hb_004122_040 Hb_002110_230 Hb_002110_230 Hb_001579_230--Hb_002110_230 Hb_000836_170 Hb_000836_170 Hb_001579_230--Hb_000836_170 Hb_004195_130 Hb_004195_130 Hb_001579_230--Hb_004195_130 Hb_001012_010 Hb_001012_010 Hb_005588_030--Hb_001012_010 Hb_004116_060 Hb_004116_060 Hb_005588_030--Hb_004116_060 Hb_004093_090 Hb_004093_090 Hb_005588_030--Hb_004093_090 Hb_000107_030 Hb_000107_030 Hb_005588_030--Hb_000107_030 Hb_073973_130 Hb_073973_130 Hb_005588_030--Hb_073973_130 Hb_120410_010 Hb_120410_010 Hb_005588_030--Hb_120410_010 Hb_000392_230 Hb_000392_230 Hb_010315_060--Hb_000392_230 Hb_001195_260 Hb_001195_260 Hb_010315_060--Hb_001195_260 Hb_000649_230 Hb_000649_230 Hb_010315_060--Hb_000649_230 Hb_058972_010 Hb_058972_010 Hb_010315_060--Hb_058972_010 Hb_010315_060--Hb_004122_040 Hb_022132_050 Hb_022132_050 Hb_010315_060--Hb_022132_050 Hb_000510_330 Hb_000510_330 Hb_002820_110--Hb_000510_330 Hb_002876_240 Hb_002876_240 Hb_002820_110--Hb_002876_240 Hb_017002_020 Hb_017002_020 Hb_002820_110--Hb_017002_020 Hb_008686_080 Hb_008686_080 Hb_002820_110--Hb_008686_080 Hb_000094_330 Hb_000094_330 Hb_002820_110--Hb_000094_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.49535 0.695512 3.36182 1.26651 1.95291 2.0849
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.91912 2.80738 1.15394 1.27066 0.593112

CAGE analysis