Hb_000000_460

Information

Type -
Description -
Location Contig0: 693631-694422
Sequence    

Annotation

kegg
ID rcu:RCOM_1593780
description peroxisomal biogenesis factor, putative
nr
ID XP_012071790.1
description PREDICTED: peroxisomal membrane protein 11A [Jatropha curcas]
swissprot
ID Q9FZF1
description Peroxisomal membrane protein 11A OS=Arabidopsis thaliana GN=PEX11A PE=1 SV=1
trembl
ID A0A067KQQ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04397 PE=4 SV=1
Gene Ontology
ID GO:0005779
description peroxisomal membrane protein 11a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000000_460 0.0 - - PREDICTED: peroxisomal membrane protein 11A [Jatropha curcas]
2 Hb_005054_290 0.0556537738 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
3 Hb_001102_140 0.0837335633 - - PREDICTED: methyl-CpG-binding domain-containing protein 2-like [Jatropha curcas]
4 Hb_001439_100 0.0891040166 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
5 Hb_000705_210 0.09014783 - - PREDICTED: ras-related protein Rab2BV [Jatropha curcas]
6 Hb_000679_010 0.0909401851 - - PREDICTED: uncharacterized protein LOC105637663 [Jatropha curcas]
7 Hb_000329_630 0.0911189804 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
8 Hb_001247_100 0.0940144667 - - PREDICTED: pyroglutamyl-peptidase 1-like protein [Jatropha curcas]
9 Hb_003918_010 0.0955123575 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]
10 Hb_172426_040 0.0967925855 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
11 Hb_017224_030 0.0993727213 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
12 Hb_065525_020 0.100016439 - - PREDICTED: geranylgeranyl transferase type-1 subunit beta [Jatropha curcas]
13 Hb_002061_040 0.1000705939 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
14 Hb_000445_420 0.1000807678 - - protein transporter, putative [Ricinus communis]
15 Hb_002685_110 0.1009343177 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
16 Hb_012053_070 0.1012441558 - - PREDICTED: uncharacterized protein LOC105637344 [Jatropha curcas]
17 Hb_000300_640 0.1028828464 - - PREDICTED: uncharacterized protein LOC100855285 [Vitis vinifera]
18 Hb_003057_100 0.1029949421 - - PREDICTED: LOW QUALITY PROTEIN: S-adenosylmethionine mitochondrial carrier protein-like [Malus domestica]
19 Hb_000221_210 0.1031891388 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
20 Hb_003092_040 0.1037953595 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_000000_460 Hb_000000_460 Hb_005054_290 Hb_005054_290 Hb_000000_460--Hb_005054_290 Hb_001102_140 Hb_001102_140 Hb_000000_460--Hb_001102_140 Hb_001439_100 Hb_001439_100 Hb_000000_460--Hb_001439_100 Hb_000705_210 Hb_000705_210 Hb_000000_460--Hb_000705_210 Hb_000679_010 Hb_000679_010 Hb_000000_460--Hb_000679_010 Hb_000329_630 Hb_000329_630 Hb_000000_460--Hb_000329_630 Hb_005054_290--Hb_000329_630 Hb_005054_290--Hb_001439_100 Hb_005054_290--Hb_001102_140 Hb_000003_480 Hb_000003_480 Hb_005054_290--Hb_000003_480 Hb_000023_280 Hb_000023_280 Hb_005054_290--Hb_000023_280 Hb_093084_050 Hb_093084_050 Hb_001102_140--Hb_093084_050 Hb_106724_020 Hb_106724_020 Hb_001102_140--Hb_106724_020 Hb_000656_110 Hb_000656_110 Hb_001102_140--Hb_000656_110 Hb_002685_110 Hb_002685_110 Hb_001102_140--Hb_002685_110 Hb_001439_100--Hb_000329_630 Hb_029584_050 Hb_029584_050 Hb_001439_100--Hb_029584_050 Hb_000015_040 Hb_000015_040 Hb_001439_100--Hb_000015_040 Hb_000230_270 Hb_000230_270 Hb_001439_100--Hb_000230_270 Hb_000987_070 Hb_000987_070 Hb_000705_210--Hb_000987_070 Hb_001105_070 Hb_001105_070 Hb_000705_210--Hb_001105_070 Hb_029866_090 Hb_029866_090 Hb_000705_210--Hb_029866_090 Hb_012053_070 Hb_012053_070 Hb_000705_210--Hb_012053_070 Hb_000510_130 Hb_000510_130 Hb_000705_210--Hb_000510_130 Hb_005431_010 Hb_005431_010 Hb_000705_210--Hb_005431_010 Hb_032202_190 Hb_032202_190 Hb_000679_010--Hb_032202_190 Hb_003092_040 Hb_003092_040 Hb_000679_010--Hb_003092_040 Hb_025645_010 Hb_025645_010 Hb_000679_010--Hb_025645_010 Hb_001902_140 Hb_001902_140 Hb_000679_010--Hb_001902_140 Hb_008511_120 Hb_008511_120 Hb_000679_010--Hb_008511_120 Hb_006615_020 Hb_006615_020 Hb_000679_010--Hb_006615_020 Hb_000571_120 Hb_000571_120 Hb_000329_630--Hb_000571_120 Hb_000445_420 Hb_000445_420 Hb_000329_630--Hb_000445_420 Hb_000329_650 Hb_000329_650 Hb_000329_630--Hb_000329_650
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.3122 11.382 6.34285 16.293 11.2623 13.1634
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.4093 17.854 16.5218 13.6527 5.17641

CAGE analysis