Hb_000001_050

Information

Type -
Description -
Location Contig1: 85438-86234
Sequence    

Annotation

kegg
ID rcu:RCOM_0037200
description protein-s isoprenylcysteine O-methyltransferase, putative (EC:2.1.1.100)
nr
ID XP_012090864.1
description PREDICTED: protein-S-isoprenylcysteine O-methyltransferase A-like isoform X1 [Jatropha curcas]
swissprot
ID Q93W54
description Protein-S-isoprenylcysteine O-methyltransferase B OS=Arabidopsis thaliana GN=ICMTB PE=1 SV=1
trembl
ID B9T024
description Protein-S-isoprenylcysteine O-methyltransferase OS=Ricinus communis GN=RCOM_0037200 PE=3 SV=1
Gene Ontology
ID GO:0005789
description protein-s-isoprenylcysteine o-methyltransferase a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00108: 85121-88061 , PASA_asmbl_00109: 85121-88065 , PASA_asmbl_00110: 86721-87002
cDNA
(Sanger)
(ID:Location)		 008_J11.ab1: 85527-88065 , 052_H10.ab1: 85458-88061 , 052_N02.ab1: 85515-88065

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000001_050 0.0 - - PREDICTED: protein-S-isoprenylcysteine O-methyltransferase A-like isoform X1 [Jatropha curcas]
2 Hb_029866_040 0.0701358929 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
3 Hb_000046_110 0.0758194148 - - PREDICTED: 54S ribosomal protein L39, mitochondrial [Jatropha curcas]
4 Hb_071736_020 0.0774013677 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
5 Hb_008311_010 0.0806167034 - - hypothetical protein CARUB_v10003781mg [Capsella rubella]
6 Hb_001677_110 0.0954878769 - - Protein YIPF1, putative [Ricinus communis]
7 Hb_000260_120 0.0995442736 - - DNA binding protein, putative [Ricinus communis]
8 Hb_001718_100 0.1001822019 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
9 Hb_001008_060 0.1008655777 - - PREDICTED: monothiol glutaredoxin-S15, mitochondrial [Jatropha curcas]
10 Hb_001109_020 0.1024192032 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000086_570 0.1024844205 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
12 Hb_000172_030 0.1027041171 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
13 Hb_000963_180 0.1029862429 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
14 Hb_002078_450 0.1040751311 - - nuclear transport factor, putative [Ricinus communis]
15 Hb_004724_420 0.1043942324 - - fucose synthetase, putative [Ricinus communis]
16 Hb_000377_060 0.1047557352 - - ARF GTPase activator, putative [Ricinus communis]
17 Hb_002716_070 0.1058917915 - - PREDICTED: protein ABIL2 [Jatropha curcas]
18 Hb_003632_010 0.105926222 - - conserved hypothetical protein [Ricinus communis]
19 Hb_084849_020 0.1065188173 - - ARF GTPase activator, putative [Ricinus communis]
20 Hb_183086_060 0.1072446842 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]

Gene co-expression network

sample Hb_000001_050 Hb_000001_050 Hb_029866_040 Hb_029866_040 Hb_000001_050--Hb_029866_040 Hb_000046_110 Hb_000046_110 Hb_000001_050--Hb_000046_110 Hb_071736_020 Hb_071736_020 Hb_000001_050--Hb_071736_020 Hb_008311_010 Hb_008311_010 Hb_000001_050--Hb_008311_010 Hb_001677_110 Hb_001677_110 Hb_000001_050--Hb_001677_110 Hb_000260_120 Hb_000260_120 Hb_000001_050--Hb_000260_120 Hb_000377_060 Hb_000377_060 Hb_029866_040--Hb_000377_060 Hb_005431_010 Hb_005431_010 Hb_029866_040--Hb_005431_010 Hb_011381_100 Hb_011381_100 Hb_029866_040--Hb_011381_100 Hb_001109_020 Hb_001109_020 Hb_029866_040--Hb_001109_020 Hb_000009_160 Hb_000009_160 Hb_029866_040--Hb_000009_160 Hb_000046_110--Hb_001109_020 Hb_001829_060 Hb_001829_060 Hb_000046_110--Hb_001829_060 Hb_000751_130 Hb_000751_130 Hb_000046_110--Hb_000751_130 Hb_000046_110--Hb_008311_010 Hb_003632_010 Hb_003632_010 Hb_000046_110--Hb_003632_010 Hb_003927_130 Hb_003927_130 Hb_000046_110--Hb_003927_130 Hb_002078_450 Hb_002078_450 Hb_071736_020--Hb_002078_450 Hb_001718_100 Hb_001718_100 Hb_071736_020--Hb_001718_100 Hb_000086_570 Hb_000086_570 Hb_071736_020--Hb_000086_570 Hb_001427_120 Hb_001427_120 Hb_071736_020--Hb_001427_120 Hb_000975_290 Hb_000975_290 Hb_071736_020--Hb_000975_290 Hb_021650_030 Hb_021650_030 Hb_071736_020--Hb_021650_030 Hb_008311_010--Hb_000377_060 Hb_000836_070 Hb_000836_070 Hb_008311_010--Hb_000836_070 Hb_004899_320 Hb_004899_320 Hb_008311_010--Hb_004899_320 Hb_008311_010--Hb_001109_020 Hb_026988_020 Hb_026988_020 Hb_001677_110--Hb_026988_020 Hb_002352_010 Hb_002352_010 Hb_001677_110--Hb_002352_010 Hb_001473_130 Hb_001473_130 Hb_001677_110--Hb_001473_130 Hb_001677_110--Hb_008311_010 Hb_002716_070 Hb_002716_070 Hb_001677_110--Hb_002716_070 Hb_004545_060 Hb_004545_060 Hb_000260_120--Hb_004545_060 Hb_004705_100 Hb_004705_100 Hb_000260_120--Hb_004705_100 Hb_010931_090 Hb_010931_090 Hb_000260_120--Hb_010931_090 Hb_001008_060 Hb_001008_060 Hb_000260_120--Hb_001008_060 Hb_000085_320 Hb_000085_320 Hb_000260_120--Hb_000085_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.401 6.28499 3.87722 21.3251 21.4753 33.206
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.1535 43.5503 50.4306 9.39126 4.22682

CAGE analysis