Hb_000001_080

Information

Type -
Description -
Location Contig1: 135303-141823
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000001_080 0.0 - - -
2 Hb_004346_030 0.2094629428 - - sucrose phosphate phosphatase, putative [Ricinus communis]
3 Hb_004162_260 0.2221873499 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
4 Hb_091194_010 0.2266124226 - - hypothetical protein POPTR_0006s05430g [Populus trichocarpa]
5 Hb_004672_030 0.2333970676 - - proline oxidase [Manihot esculenta]
6 Hb_007831_020 0.2385935864 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002843_080 0.2441463695 - - SAUR family protein [Theobroma cacao]
8 Hb_034013_020 0.2443265296 - - PREDICTED: protein trichome birefringence-like 11 [Jatropha curcas]
9 Hb_025964_050 0.2448907906 - - PREDICTED: neural Wiskott-Aldrich syndrome protein [Jatropha curcas]
10 Hb_002936_080 0.2454104465 - - Protein bem46, putative [Ricinus communis]
11 Hb_006442_020 0.245730707 - - PREDICTED: very-long-chain enoyl-CoA reductase [Jatropha curcas]
12 Hb_000529_220 0.2479269887 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002609_040 0.2480237787 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
14 Hb_005344_030 0.249092185 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
15 Hb_005375_020 0.2523396675 - - PREDICTED: endoribonuclease Dicer homolog 1-like [Nicotiana sylvestris]
16 Hb_002260_030 0.2531790183 - - PREDICTED: putative glutamine amidotransferase YLR126C [Jatropha curcas]
17 Hb_000272_140 0.2538151926 - - Protein bem46, putative [Ricinus communis]
18 Hb_002284_310 0.2540229942 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
19 Hb_000169_140 0.2543130921 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
20 Hb_000705_290 0.2545738027 - - C-4 methyl sterol oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000001_080 Hb_000001_080 Hb_004346_030 Hb_004346_030 Hb_000001_080--Hb_004346_030 Hb_004162_260 Hb_004162_260 Hb_000001_080--Hb_004162_260 Hb_091194_010 Hb_091194_010 Hb_000001_080--Hb_091194_010 Hb_004672_030 Hb_004672_030 Hb_000001_080--Hb_004672_030 Hb_007831_020 Hb_007831_020 Hb_000001_080--Hb_007831_020 Hb_002843_080 Hb_002843_080 Hb_000001_080--Hb_002843_080 Hb_004346_030--Hb_007831_020 Hb_002503_020 Hb_002503_020 Hb_004346_030--Hb_002503_020 Hb_002284_310 Hb_002284_310 Hb_004346_030--Hb_002284_310 Hb_000174_030 Hb_000174_030 Hb_004346_030--Hb_000174_030 Hb_000617_200 Hb_000617_200 Hb_004346_030--Hb_000617_200 Hb_004225_080 Hb_004225_080 Hb_004346_030--Hb_004225_080 Hb_002936_080 Hb_002936_080 Hb_004162_260--Hb_002936_080 Hb_014834_010 Hb_014834_010 Hb_004162_260--Hb_014834_010 Hb_002260_030 Hb_002260_030 Hb_004162_260--Hb_002260_030 Hb_007520_010 Hb_007520_010 Hb_004162_260--Hb_007520_010 Hb_000914_170 Hb_000914_170 Hb_004162_260--Hb_000914_170 Hb_000935_030 Hb_000935_030 Hb_004162_260--Hb_000935_030 Hb_000429_090 Hb_000429_090 Hb_091194_010--Hb_000429_090 Hb_000429_100 Hb_000429_100 Hb_091194_010--Hb_000429_100 Hb_000169_140 Hb_000169_140 Hb_091194_010--Hb_000169_140 Hb_001136_060 Hb_001136_060 Hb_091194_010--Hb_001136_060 Hb_002809_150 Hb_002809_150 Hb_091194_010--Hb_002809_150 Hb_000705_290 Hb_000705_290 Hb_091194_010--Hb_000705_290 Hb_004128_070 Hb_004128_070 Hb_004672_030--Hb_004128_070 Hb_000525_050 Hb_000525_050 Hb_004672_030--Hb_000525_050 Hb_005846_030 Hb_005846_030 Hb_004672_030--Hb_005846_030 Hb_065525_120 Hb_065525_120 Hb_004672_030--Hb_065525_120 Hb_004672_030--Hb_002936_080 Hb_004672_030--Hb_004346_030 Hb_007831_020--Hb_002284_310 Hb_001014_170 Hb_001014_170 Hb_007831_020--Hb_001014_170 Hb_003687_150 Hb_003687_150 Hb_007831_020--Hb_003687_150 Hb_000335_030 Hb_000335_030 Hb_007831_020--Hb_000335_030 Hb_034013_020 Hb_034013_020 Hb_007831_020--Hb_034013_020 Hb_000539_030 Hb_000539_030 Hb_002843_080--Hb_000539_030 Hb_006538_140 Hb_006538_140 Hb_002843_080--Hb_006538_140 Hb_002843_080--Hb_002260_030 Hb_024154_020 Hb_024154_020 Hb_002843_080--Hb_024154_020 Hb_002843_080--Hb_000914_170 Hb_000260_210 Hb_000260_210 Hb_002843_080--Hb_000260_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0397602 0.0265354 0.0252672 0.0544538 0 0.0394598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.145598 0.0572372 0.102975 0 0.11422

CAGE analysis