Hb_000001_090

Information

Type -
Description -
Location Contig1: 171524-183621
Sequence    

Annotation

kegg
ID pop:POPTR_0006s21220g
description POPTRDRAFT_831984; rhomboid family protein
nr
ID XP_011047108.1
description PREDICTED: uncharacterized protein At3g58460 [Populus euphratica]
swissprot
ID Q8LB17
description Uncharacterized protein At3g58460 OS=Arabidopsis thaliana GN=At3g58460 PE=1 SV=2
trembl
ID B9H9X7
description Rhomboid family protein OS=Populus trichocarpa GN=POPTR_0006s21220g PE=4 SV=1
Gene Ontology
ID GO:0016021
description rhomboid family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00111: 165667-183649 , PASA_asmbl_00112: 170620-183612
cDNA
(Sanger)
(ID:Location)		 018_N24.ab1: 165667-180239

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000001_090 0.0 - - PREDICTED: uncharacterized protein At3g58460 [Populus euphratica]
2 Hb_000866_070 0.0496613201 - - PREDICTED: LOW QUALITY PROTEIN: SKP1-like protein 21 [Jatropha curcas]
3 Hb_029584_120 0.0624192547 - - PREDICTED: K(+) efflux antiporter 4 isoform X1 [Jatropha curcas]
4 Hb_006588_160 0.074002964 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_002942_230 0.0745080648 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]
6 Hb_003687_080 0.0835049788 - - PREDICTED: casein kinase I-like [Jatropha curcas]
7 Hb_074399_010 0.0877388222 - - PREDICTED: phragmoplast orienting kinesin-1 isoform X1 [Populus euphratica]
8 Hb_004013_030 0.0939891391 - - Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, putative [Ricinus communis]
9 Hb_001279_020 0.0952046391 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
10 Hb_004724_390 0.0956057555 - - PREDICTED: nicalin-1-like [Populus euphratica]
11 Hb_001053_080 0.096180149 - - OsCesA3 protein [Morus notabilis]
12 Hb_002045_170 0.0962975964 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
13 Hb_000258_220 0.0965668193 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
14 Hb_000968_060 0.0991739813 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
15 Hb_001279_090 0.1022642612 - - PREDICTED: uncharacterized protein LOC105633322 [Jatropha curcas]
16 Hb_000154_050 0.1027782042 - - CMP-sialic acid transporter, putative [Ricinus communis]
17 Hb_004907_090 0.1032448435 - - ATP binding protein, putative [Ricinus communis]
18 Hb_001411_130 0.103630219 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
19 Hb_006816_190 0.105617467 - - calreticulin family protein [Populus trichocarpa]
20 Hb_005511_130 0.1079352293 - - PREDICTED: transmembrane protein 115-like [Populus euphratica]

Gene co-expression network

sample Hb_000001_090 Hb_000001_090 Hb_000866_070 Hb_000866_070 Hb_000001_090--Hb_000866_070 Hb_029584_120 Hb_029584_120 Hb_000001_090--Hb_029584_120 Hb_006588_160 Hb_006588_160 Hb_000001_090--Hb_006588_160 Hb_002942_230 Hb_002942_230 Hb_000001_090--Hb_002942_230 Hb_003687_080 Hb_003687_080 Hb_000001_090--Hb_003687_080 Hb_074399_010 Hb_074399_010 Hb_000001_090--Hb_074399_010 Hb_000866_070--Hb_002942_230 Hb_000866_070--Hb_029584_120 Hb_000968_060 Hb_000968_060 Hb_000866_070--Hb_000968_060 Hb_001411_130 Hb_001411_130 Hb_000866_070--Hb_001411_130 Hb_002217_080 Hb_002217_080 Hb_000866_070--Hb_002217_080 Hb_000258_220 Hb_000258_220 Hb_029584_120--Hb_000258_220 Hb_029584_120--Hb_074399_010 Hb_004724_390 Hb_004724_390 Hb_029584_120--Hb_004724_390 Hb_029584_120--Hb_002942_230 Hb_000154_050 Hb_000154_050 Hb_006588_160--Hb_000154_050 Hb_004013_030 Hb_004013_030 Hb_006588_160--Hb_004013_030 Hb_001053_080 Hb_001053_080 Hb_006588_160--Hb_001053_080 Hb_002837_040 Hb_002837_040 Hb_006588_160--Hb_002837_040 Hb_001450_020 Hb_001450_020 Hb_006588_160--Hb_001450_020 Hb_002942_230--Hb_002217_080 Hb_002942_230--Hb_001411_130 Hb_002687_200 Hb_002687_200 Hb_002942_230--Hb_002687_200 Hb_003540_080 Hb_003540_080 Hb_002942_230--Hb_003540_080 Hb_001160_110 Hb_001160_110 Hb_003687_080--Hb_001160_110 Hb_000327_330 Hb_000327_330 Hb_003687_080--Hb_000327_330 Hb_003687_080--Hb_074399_010 Hb_005511_130 Hb_005511_130 Hb_003687_080--Hb_005511_130 Hb_000318_220 Hb_000318_220 Hb_003687_080--Hb_000318_220 Hb_000703_160 Hb_000703_160 Hb_074399_010--Hb_000703_160 Hb_074399_010--Hb_000258_220 Hb_007919_110 Hb_007919_110 Hb_074399_010--Hb_007919_110 Hb_074399_010--Hb_004013_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.91655 12.5309 35.159 32.1503 11.9238 8.55514
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.35275 5.10374 4.04006 12.7987 21.8042

CAGE analysis