Hb_000001_150

Information

Type -
Description -
Location Contig1: 257605-261963
Sequence    

Annotation

kegg
ID tcc:TCM_025046
description UPF0184 protein AAEL002161, putative
nr
ID XP_011042516.1
description PREDICTED: uncharacterized protein LOC105138186 isoform X1 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A061F577
description UPF0184 protein AAEL002161, putative OS=Theobroma cacao GN=TCM_025046 PE=4 SV=1
Gene Ontology
ID GO:0006259
description upf0184 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00121: 260565-261874
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000001_150 0.0 - - PREDICTED: uncharacterized protein LOC105138186 isoform X1 [Populus euphratica]
2 Hb_007632_080 0.2041738403 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
3 Hb_002811_210 0.2080856688 - - PREDICTED: serine/threonine-protein kinase Nek1 isoform X1 [Jatropha curcas]
4 Hb_006289_020 0.215581052 - - PREDICTED: shugoshin-1 isoform X1 [Jatropha curcas]
5 Hb_001584_360 0.2193553431 - - PREDICTED: serine/threonine-protein kinase haspin homolog hrk1 [Jatropha curcas]
6 Hb_000479_020 0.2197048316 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000288_090 0.2234006503 - - unnamed protein product [Vitis vinifera]
8 Hb_000960_090 0.2240470805 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003878_060 0.2251009875 - - hypothetical protein B456_007G326900, partial [Gossypium raimondii]
10 Hb_000028_530 0.2272254027 - - Protein regulator of cytokinesis, putative [Ricinus communis]
11 Hb_000365_210 0.2286529469 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
12 Hb_000960_120 0.2316189345 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
13 Hb_033041_010 0.2319424331 - - PREDICTED: phragmoplast orienting kinesin 2-like [Populus euphratica]
14 Hb_012150_040 0.2334494564 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005183_150 0.2370832546 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
16 Hb_001328_070 0.2378505977 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13 [Jatropha curcas]
17 Hb_000742_180 0.2388027363 - - hypothetical protein POPTR_0011s16640g [Populus trichocarpa]
18 Hb_000661_150 0.2397528939 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
19 Hb_013344_010 0.2401107714 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
20 Hb_011063_040 0.2405785992 - - PREDICTED: uncharacterized protein LOC100853799 [Vitis vinifera]

Gene co-expression network

sample Hb_000001_150 Hb_000001_150 Hb_007632_080 Hb_007632_080 Hb_000001_150--Hb_007632_080 Hb_002811_210 Hb_002811_210 Hb_000001_150--Hb_002811_210 Hb_006289_020 Hb_006289_020 Hb_000001_150--Hb_006289_020 Hb_001584_360 Hb_001584_360 Hb_000001_150--Hb_001584_360 Hb_000479_020 Hb_000479_020 Hb_000001_150--Hb_000479_020 Hb_000288_090 Hb_000288_090 Hb_000001_150--Hb_000288_090 Hb_033041_010 Hb_033041_010 Hb_007632_080--Hb_033041_010 Hb_005183_150 Hb_005183_150 Hb_007632_080--Hb_005183_150 Hb_003109_010 Hb_003109_010 Hb_007632_080--Hb_003109_010 Hb_000028_530 Hb_000028_530 Hb_007632_080--Hb_000028_530 Hb_101133_050 Hb_101133_050 Hb_007632_080--Hb_101133_050 Hb_000334_120 Hb_000334_120 Hb_007632_080--Hb_000334_120 Hb_004635_020 Hb_004635_020 Hb_002811_210--Hb_004635_020 Hb_002811_210--Hb_000028_530 Hb_000960_120 Hb_000960_120 Hb_002811_210--Hb_000960_120 Hb_000265_100 Hb_000265_100 Hb_002811_210--Hb_000265_100 Hb_010021_060 Hb_010021_060 Hb_002811_210--Hb_010021_060 Hb_000936_030 Hb_000936_030 Hb_002811_210--Hb_000936_030 Hb_002965_160 Hb_002965_160 Hb_006289_020--Hb_002965_160 Hb_003878_060 Hb_003878_060 Hb_006289_020--Hb_003878_060 Hb_000236_480 Hb_000236_480 Hb_006289_020--Hb_000236_480 Hb_008725_070 Hb_008725_070 Hb_006289_020--Hb_008725_070 Hb_000960_090 Hb_000960_090 Hb_006289_020--Hb_000960_090 Hb_006289_020--Hb_000288_090 Hb_001584_360--Hb_000334_120 Hb_001688_100 Hb_001688_100 Hb_001584_360--Hb_001688_100 Hb_001584_360--Hb_033041_010 Hb_001584_360--Hb_005183_150 Hb_001584_360--Hb_007632_080 Hb_001584_360--Hb_101133_050 Hb_000742_180 Hb_000742_180 Hb_000479_020--Hb_000742_180 Hb_000479_020--Hb_003109_010 Hb_000479_020--Hb_007632_080 Hb_012150_040 Hb_012150_040 Hb_000479_020--Hb_012150_040 Hb_000479_020--Hb_002965_160 Hb_000576_140 Hb_000576_140 Hb_000479_020--Hb_000576_140 Hb_000181_270 Hb_000181_270 Hb_000288_090--Hb_000181_270 Hb_000365_210 Hb_000365_210 Hb_000288_090--Hb_000365_210 Hb_006970_130 Hb_006970_130 Hb_000288_090--Hb_006970_130 Hb_000003_060 Hb_000003_060 Hb_000288_090--Hb_000003_060 Hb_000260_650 Hb_000260_650 Hb_000288_090--Hb_000260_650 Hb_004920_050 Hb_004920_050 Hb_000288_090--Hb_004920_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0570582 0.281905 5.20952 2.61158 0.839792 0.0404921
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0434748 0 0.507362 0.973693 0.141071

CAGE analysis