Hb_000001_160

Information

Type -
Description -
Location Contig1: 282752-288032
Sequence    

Annotation

kegg
ID rcu:RCOM_0423040
description Transferrin receptor protein, putative (EC:1.3.1.74)
nr
ID XP_012090878.1
description PREDICTED: probable glutamate carboxypeptidase 2 isoform X2 [Jatropha curcas]
swissprot
ID Q9M1S8
description Probable glutamate carboxypeptidase 2 OS=Arabidopsis thaliana GN=AMP1 PE=1 SV=3
trembl
ID A0A067JGK3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03066 PE=4 SV=1
Gene Ontology
ID GO:0004181
description probable glutamate carboxypeptidase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00123: 283492-284242 , PASA_asmbl_00124: 284741-287249 , PASA_asmbl_00125: 287640-287764
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000001_160 0.0 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X2 [Jatropha curcas]
2 Hb_003043_060 0.1522899269 - - -
3 Hb_003243_020 0.1680159935 - - PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
4 Hb_030627_040 0.1746133849 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
5 Hb_012340_020 0.1835787655 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Jatropha curcas]
6 Hb_002518_300 0.1867672592 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
7 Hb_002326_060 0.1893312077 - - PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
8 Hb_001901_080 0.191763898 - - PREDICTED: xylose isomerase [Jatropha curcas]
9 Hb_007044_010 0.1932399193 - - -
10 Hb_010254_020 0.1961028763 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
11 Hb_017711_020 0.1963937373 - - PREDICTED: cysteine-rich repeat secretory protein 56 isoform X1 [Jatropha curcas]
12 Hb_000853_290 0.198105034 - - PREDICTED: uncharacterized protein LOC105642585 [Jatropha curcas]
13 Hb_006816_120 0.1992633096 - - Nicotianamine synthase, putative [Ricinus communis]
14 Hb_000206_130 0.1998088528 - - unnamed protein product [Vitis vinifera]
15 Hb_006882_010 0.2000670237 - - PREDICTED: dnaJ homolog subfamily B member 1 [Cucumis sativus]
16 Hb_000040_050 0.2004368669 - - PREDICTED: uncharacterized protein LOC102617857 isoform X1 [Citrus sinensis]
17 Hb_003492_010 0.2006384947 - - DREPP plasma membrane polypeptide family protein [Populus trichocarpa]
18 Hb_020805_010 0.201150663 - - protein with unknown function [Ricinus communis]
19 Hb_120662_010 0.2012412555 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
20 Hb_000619_070 0.2026935628 - - PREDICTED: DNA mismatch repair protein MLH1 [Jatropha curcas]

Gene co-expression network

sample Hb_000001_160 Hb_000001_160 Hb_003043_060 Hb_003043_060 Hb_000001_160--Hb_003043_060 Hb_003243_020 Hb_003243_020 Hb_000001_160--Hb_003243_020 Hb_030627_040 Hb_030627_040 Hb_000001_160--Hb_030627_040 Hb_012340_020 Hb_012340_020 Hb_000001_160--Hb_012340_020 Hb_002518_300 Hb_002518_300 Hb_000001_160--Hb_002518_300 Hb_002326_060 Hb_002326_060 Hb_000001_160--Hb_002326_060 Hb_001901_080 Hb_001901_080 Hb_003043_060--Hb_001901_080 Hb_120662_010 Hb_120662_010 Hb_003043_060--Hb_120662_010 Hb_000613_100 Hb_000613_100 Hb_003043_060--Hb_000613_100 Hb_027420_050 Hb_027420_050 Hb_003043_060--Hb_027420_050 Hb_003043_060--Hb_003243_020 Hb_003243_020--Hb_002518_300 Hb_006882_010 Hb_006882_010 Hb_003243_020--Hb_006882_010 Hb_008406_130 Hb_008406_130 Hb_003243_020--Hb_008406_130 Hb_002159_030 Hb_002159_030 Hb_003243_020--Hb_002159_030 Hb_003243_020--Hb_001901_080 Hb_099698_010 Hb_099698_010 Hb_003243_020--Hb_099698_010 Hb_001390_010 Hb_001390_010 Hb_030627_040--Hb_001390_010 Hb_000040_050 Hb_000040_050 Hb_030627_040--Hb_000040_050 Hb_030627_040--Hb_006882_010 Hb_030627_040--Hb_002159_030 Hb_005460_030 Hb_005460_030 Hb_030627_040--Hb_005460_030 Hb_003436_050 Hb_003436_050 Hb_030627_040--Hb_003436_050 Hb_001534_070 Hb_001534_070 Hb_012340_020--Hb_001534_070 Hb_002374_440 Hb_002374_440 Hb_012340_020--Hb_002374_440 Hb_000206_130 Hb_000206_130 Hb_012340_020--Hb_000206_130 Hb_010068_030 Hb_010068_030 Hb_012340_020--Hb_010068_030 Hb_002918_310 Hb_002918_310 Hb_012340_020--Hb_002918_310 Hb_003688_200 Hb_003688_200 Hb_012340_020--Hb_003688_200 Hb_007416_370 Hb_007416_370 Hb_002518_300--Hb_007416_370 Hb_002518_300--Hb_099698_010 Hb_002518_300--Hb_008406_130 Hb_002518_300--Hb_000040_050 Hb_004712_110 Hb_004712_110 Hb_002518_300--Hb_004712_110 Hb_001159_210 Hb_001159_210 Hb_002326_060--Hb_001159_210 Hb_134732_010 Hb_134732_010 Hb_002326_060--Hb_134732_010 Hb_000176_060 Hb_000176_060 Hb_002326_060--Hb_000176_060 Hb_001935_190 Hb_001935_190 Hb_002326_060--Hb_001935_190 Hb_000038_150 Hb_000038_150 Hb_002326_060--Hb_000038_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.5624 7.15544 0.883307 4.40152 30.5349 22.5762
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.72266 0.888086 1.60022 1.34987 3.63382

CAGE analysis