Hb_000002_010

Information

Type -
Description -
Location Contig2: 24728-26977
Sequence    

Annotation

kegg
ID rcu:RCOM_1104460
description hypothetical protein
nr
ID XP_012081540.1
description PREDICTED: uncharacterized protein LOC105641567 [Jatropha curcas]
swissprot
ID Q8TBM8
description DnaJ homolog subfamily B member 14 OS=Homo sapiens GN=DNAJB14 PE=1 SV=1
trembl
ID A0A067KDB3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18409 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20058: 23589-25869 , PASA_asmbl_20059: 23630-25869
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000002_010 0.0 - - PREDICTED: uncharacterized protein LOC105641567 [Jatropha curcas]
2 Hb_010174_110 0.0585912486 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
3 Hb_001341_170 0.0700609826 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
4 Hb_000107_490 0.0730190662 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
5 Hb_000556_160 0.073997044 - - PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Jatropha curcas]
6 Hb_000111_290 0.0740778943 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
7 Hb_003253_040 0.0759834439 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
8 Hb_001266_100 0.0786749816 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
9 Hb_172632_110 0.0788726368 - - PREDICTED: pumilio homolog 5 [Jatropha curcas]
10 Hb_004032_380 0.0789737984 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
11 Hb_000181_320 0.0790005874 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
12 Hb_000866_170 0.080242373 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_004994_220 0.081566388 - - PREDICTED: K(+) efflux antiporter 2, chloroplastic-like isoform X2 [Jatropha curcas]
14 Hb_003647_130 0.0822903538 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
15 Hb_000041_110 0.0824764224 - - PREDICTED: WW domain-binding protein 11 isoform X1 [Jatropha curcas]
16 Hb_017862_020 0.0827267716 - - PREDICTED: probable inactive serine/threonine-protein kinase lvsG [Jatropha curcas]
17 Hb_000025_790 0.0832917541 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
18 Hb_002740_110 0.0834130521 - - PREDICTED: phytochrome A [Jatropha curcas]
19 Hb_000890_210 0.0835623774 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
20 Hb_006831_040 0.0839726217 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000002_010 Hb_000002_010 Hb_010174_110 Hb_010174_110 Hb_000002_010--Hb_010174_110 Hb_001341_170 Hb_001341_170 Hb_000002_010--Hb_001341_170 Hb_000107_490 Hb_000107_490 Hb_000002_010--Hb_000107_490 Hb_000556_160 Hb_000556_160 Hb_000002_010--Hb_000556_160 Hb_000111_290 Hb_000111_290 Hb_000002_010--Hb_000111_290 Hb_003253_040 Hb_003253_040 Hb_000002_010--Hb_003253_040 Hb_002740_110 Hb_002740_110 Hb_010174_110--Hb_002740_110 Hb_010174_110--Hb_003253_040 Hb_010174_110--Hb_000107_490 Hb_004143_130 Hb_004143_130 Hb_010174_110--Hb_004143_130 Hb_004994_220 Hb_004994_220 Hb_010174_110--Hb_004994_220 Hb_004724_150 Hb_004724_150 Hb_001341_170--Hb_004724_150 Hb_000225_040 Hb_000225_040 Hb_001341_170--Hb_000225_040 Hb_000890_210 Hb_000890_210 Hb_001341_170--Hb_000890_210 Hb_001341_170--Hb_000556_160 Hb_011485_070 Hb_011485_070 Hb_001341_170--Hb_011485_070 Hb_010618_010 Hb_010618_010 Hb_001341_170--Hb_010618_010 Hb_000245_040 Hb_000245_040 Hb_000107_490--Hb_000245_040 Hb_000107_490--Hb_000890_210 Hb_000107_490--Hb_000111_290 Hb_003370_030 Hb_003370_030 Hb_000107_490--Hb_003370_030 Hb_000107_490--Hb_004724_150 Hb_002686_030 Hb_002686_030 Hb_000556_160--Hb_002686_030 Hb_000556_160--Hb_004724_150 Hb_002499_040 Hb_002499_040 Hb_000556_160--Hb_002499_040 Hb_003294_070 Hb_003294_070 Hb_000556_160--Hb_003294_070 Hb_000185_030 Hb_000185_030 Hb_000556_160--Hb_000185_030 Hb_001417_030 Hb_001417_030 Hb_000111_290--Hb_001417_030 Hb_004324_130 Hb_004324_130 Hb_000111_290--Hb_004324_130 Hb_002456_010 Hb_002456_010 Hb_000111_290--Hb_002456_010 Hb_003913_070 Hb_003913_070 Hb_000111_290--Hb_003913_070 Hb_000614_240 Hb_000614_240 Hb_000111_290--Hb_000614_240 Hb_001999_310 Hb_001999_310 Hb_000111_290--Hb_001999_310 Hb_003253_040--Hb_002740_110 Hb_001199_100 Hb_001199_100 Hb_003253_040--Hb_001199_100 Hb_002942_100 Hb_002942_100 Hb_003253_040--Hb_002942_100 Hb_002063_020 Hb_002063_020 Hb_003253_040--Hb_002063_020 Hb_003253_040--Hb_004143_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.33733 7.25198 2.28149 4.72835 5.81798 5.93051
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.57843 6.11348 7.38584 9.51415 5.62124

CAGE analysis