Hb_000002_050

Information

Type -
Description -
Location Contig2: 60918-63911
Sequence    

Annotation

kegg
ID cit:102617894
description pentatricopeptide repeat-containing protein At4g33990-like
nr
ID XP_012089828.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g33990 [Jatropha curcas]
swissprot
ID O81767
description Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
trembl
ID A0A067F8D6
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003439mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20067: 63292-63603 , PASA_asmbl_20068: 63682-64011
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000002_050 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990 [Jatropha curcas]
2 Hb_001454_190 0.073101469 - - PREDICTED: pentatricopeptide repeat-containing protein At3g06920 [Jatropha curcas]
3 Hb_004846_070 0.0807974697 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14730 [Populus euphratica]
4 Hb_007747_200 0.0831141435 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Jatropha curcas]
5 Hb_016901_010 0.0836840334 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
6 Hb_000019_130 0.0964993335 - - PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Jatropha curcas]
7 Hb_001373_180 0.0976218133 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
8 Hb_000723_080 0.0986871304 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
9 Hb_007075_050 0.0994155771 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_002235_280 0.0995426817 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Jatropha curcas]
11 Hb_172932_010 0.1006979064 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_008695_100 0.1019339104 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Jatropha curcas]
13 Hb_001699_130 0.1028560057 transcription factor TF Family: CSD PREDICTED: cold shock domain-containing protein 3 [Jatropha curcas]
14 Hb_010608_050 0.1044471961 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
15 Hb_000617_150 0.1053443163 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Jatropha curcas]
16 Hb_003687_100 0.1066822716 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Jatropha curcas]
17 Hb_012325_020 0.1069317681 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
18 Hb_004586_340 0.107226298 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
19 Hb_000022_250 0.1079700477 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Jatropha curcas]
20 Hb_004374_070 0.1089601315 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]

Gene co-expression network

sample Hb_000002_050 Hb_000002_050 Hb_001454_190 Hb_001454_190 Hb_000002_050--Hb_001454_190 Hb_004846_070 Hb_004846_070 Hb_000002_050--Hb_004846_070 Hb_007747_200 Hb_007747_200 Hb_000002_050--Hb_007747_200 Hb_016901_010 Hb_016901_010 Hb_000002_050--Hb_016901_010 Hb_000019_130 Hb_000019_130 Hb_000002_050--Hb_000019_130 Hb_001373_180 Hb_001373_180 Hb_000002_050--Hb_001373_180 Hb_172932_010 Hb_172932_010 Hb_001454_190--Hb_172932_010 Hb_012325_020 Hb_012325_020 Hb_001454_190--Hb_012325_020 Hb_001454_190--Hb_016901_010 Hb_000617_150 Hb_000617_150 Hb_001454_190--Hb_000617_150 Hb_011534_030 Hb_011534_030 Hb_001454_190--Hb_011534_030 Hb_000206_240 Hb_000206_240 Hb_004846_070--Hb_000206_240 Hb_001090_050 Hb_001090_050 Hb_004846_070--Hb_001090_050 Hb_013607_040 Hb_013607_040 Hb_004846_070--Hb_013607_040 Hb_002307_170 Hb_002307_170 Hb_004846_070--Hb_002307_170 Hb_008695_100 Hb_008695_100 Hb_004846_070--Hb_008695_100 Hb_007747_200--Hb_000019_130 Hb_000317_280 Hb_000317_280 Hb_007747_200--Hb_000317_280 Hb_006846_110 Hb_006846_110 Hb_007747_200--Hb_006846_110 Hb_000343_130 Hb_000343_130 Hb_007747_200--Hb_000343_130 Hb_007747_200--Hb_016901_010 Hb_000696_040 Hb_000696_040 Hb_016901_010--Hb_000696_040 Hb_010172_050 Hb_010172_050 Hb_016901_010--Hb_010172_050 Hb_085863_030 Hb_085863_030 Hb_016901_010--Hb_085863_030 Hb_000723_080 Hb_000723_080 Hb_016901_010--Hb_000723_080 Hb_016901_010--Hb_000343_130 Hb_027472_170 Hb_027472_170 Hb_000019_130--Hb_027472_170 Hb_000935_050 Hb_000935_050 Hb_000019_130--Hb_000935_050 Hb_000997_400 Hb_000997_400 Hb_000019_130--Hb_000997_400 Hb_000007_150 Hb_000007_150 Hb_000019_130--Hb_000007_150 Hb_007075_050 Hb_007075_050 Hb_000019_130--Hb_007075_050 Hb_001373_180--Hb_013607_040 Hb_000189_140 Hb_000189_140 Hb_001373_180--Hb_000189_140 Hb_001373_180--Hb_004846_070 Hb_001373_180--Hb_000723_080 Hb_002235_280 Hb_002235_280 Hb_001373_180--Hb_002235_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.62466 1.88414 0.534584 0.595348 1.61186 2.50518
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.78859 3.6452 4.88201 1.74946 1.70478

CAGE analysis