Hb_000002_060

Information

Type -
Description -
Location Contig2: 67440-68193
Sequence    

Annotation

kegg
ID brp:103862313
description uncharacterized LOC103862313
nr
ID CDY49267.1
description BnaA03g50800D [Brassica napus]
swissprot
ID -
description -
trembl
ID A0A078IH19
description BnaA03g50800D protein OS=Brassica napus GN=BnaA03g50800D PE=4 SV=1
Gene Ontology
ID GO:0005634
description zinc finger cchc domain-containing protein 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000002_060 0.0 - - BnaA03g50800D [Brassica napus]
2 Hb_125126_010 0.1849392173 desease resistance Gene Name: NB-ARC resistance family protein [Populus trichocarpa]
3 Hb_042175_010 0.1868624022 - - hypothetical protein CISIN_1g0016721mg, partial [Citrus sinensis]
4 Hb_001907_100 0.1880078155 - - PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
5 Hb_000270_350 0.1958246446 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
6 Hb_002173_020 0.1966815696 - - PREDICTED: uncharacterized protein LOC105801078 [Gossypium raimondii]
7 Hb_001865_060 0.1993575768 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
8 Hb_002027_380 0.2003704035 - - PREDICTED: secoisolariciresinol dehydrogenase isoform X2 [Jatropha curcas]
9 Hb_012226_010 0.2007159903 - - PREDICTED: protein DGCR14 [Jatropha curcas]
10 Hb_046117_010 0.2033835633 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 3 [Jatropha curcas]
11 Hb_001141_360 0.2068400896 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
12 Hb_000465_080 0.2069031608 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
13 Hb_001369_770 0.20864178 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
14 Hb_000836_370 0.2098117802 - - PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
15 Hb_000061_490 0.2098785747 - - hypothetical protein CISIN_1g0362002mg, partial [Citrus sinensis]
16 Hb_009393_180 0.2115541545 - - PREDICTED: uncharacterized protein LOC101292333 [Fragaria vesca subsp. vesca]
17 Hb_003226_110 0.2122102328 - - PREDICTED: exocyst complex component SEC15B [Jatropha curcas]
18 Hb_000540_110 0.2123180786 - - hypothetical protein PRUPE_ppa000777mg [Prunus persica]
19 Hb_004310_040 0.2126285228 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002485_040 0.2128109375 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]

Gene co-expression network

sample Hb_000002_060 Hb_000002_060 Hb_125126_010 Hb_125126_010 Hb_000002_060--Hb_125126_010 Hb_042175_010 Hb_042175_010 Hb_000002_060--Hb_042175_010 Hb_001907_100 Hb_001907_100 Hb_000002_060--Hb_001907_100 Hb_000270_350 Hb_000270_350 Hb_000002_060--Hb_000270_350 Hb_002173_020 Hb_002173_020 Hb_000002_060--Hb_002173_020 Hb_001865_060 Hb_001865_060 Hb_000002_060--Hb_001865_060 Hb_000130_280 Hb_000130_280 Hb_125126_010--Hb_000130_280 Hb_006738_050 Hb_006738_050 Hb_125126_010--Hb_006738_050 Hb_004310_040 Hb_004310_040 Hb_125126_010--Hb_004310_040 Hb_011249_060 Hb_011249_060 Hb_125126_010--Hb_011249_060 Hb_005188_040 Hb_005188_040 Hb_125126_010--Hb_005188_040 Hb_000123_350 Hb_000123_350 Hb_125126_010--Hb_000123_350 Hb_003060_090 Hb_003060_090 Hb_042175_010--Hb_003060_090 Hb_001141_360 Hb_001141_360 Hb_042175_010--Hb_001141_360 Hb_002686_280 Hb_002686_280 Hb_042175_010--Hb_002686_280 Hb_001863_150 Hb_001863_150 Hb_042175_010--Hb_001863_150 Hb_042175_010--Hb_001865_060 Hb_000010_350 Hb_000010_350 Hb_042175_010--Hb_000010_350 Hb_002316_050 Hb_002316_050 Hb_001907_100--Hb_002316_050 Hb_003155_020 Hb_003155_020 Hb_001907_100--Hb_003155_020 Hb_010831_020 Hb_010831_020 Hb_001907_100--Hb_010831_020 Hb_000808_070 Hb_000808_070 Hb_001907_100--Hb_000808_070 Hb_181975_010 Hb_181975_010 Hb_001907_100--Hb_181975_010 Hb_007257_050 Hb_007257_050 Hb_001907_100--Hb_007257_050 Hb_002524_020 Hb_002524_020 Hb_000270_350--Hb_002524_020 Hb_002781_010 Hb_002781_010 Hb_000270_350--Hb_002781_010 Hb_062416_010 Hb_062416_010 Hb_000270_350--Hb_062416_010 Hb_001268_310 Hb_001268_310 Hb_000270_350--Hb_001268_310 Hb_001675_010 Hb_001675_010 Hb_000270_350--Hb_001675_010 Hb_003544_070 Hb_003544_070 Hb_000270_350--Hb_003544_070 Hb_000979_240 Hb_000979_240 Hb_002173_020--Hb_000979_240 Hb_000599_130 Hb_000599_130 Hb_002173_020--Hb_000599_130 Hb_104265_030 Hb_104265_030 Hb_002173_020--Hb_104265_030 Hb_065500_030 Hb_065500_030 Hb_002173_020--Hb_065500_030 Hb_003125_030 Hb_003125_030 Hb_002173_020--Hb_003125_030 Hb_001511_110 Hb_001511_110 Hb_002173_020--Hb_001511_110 Hb_001865_060--Hb_001141_360 Hb_012725_040 Hb_012725_040 Hb_001865_060--Hb_012725_040 Hb_000062_080 Hb_000062_080 Hb_001865_060--Hb_000062_080 Hb_002485_040 Hb_002485_040 Hb_001865_060--Hb_002485_040 Hb_003494_060 Hb_003494_060 Hb_001865_060--Hb_003494_060 Hb_004032_310 Hb_004032_310 Hb_001865_060--Hb_004032_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.61555 4.65072 0.84444 0.737119 0.491824 1.46417
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.440193 1.03736 0 0.818987 0.638403

CAGE analysis