Hb_000002_100

Information

Type -
Description -
Location Contig2: 197014-198627
Sequence    

Annotation

kegg
ID rcu:RCOM_1006970
description inorganic phosphate transporter, putative
nr
ID AJH76871.1
description phosphate transporter [Manihot esculenta]
swissprot
ID Q494P0
description Probable inorganic phosphate transporter 1-7 OS=Arabidopsis thaliana GN=PHT1-7 PE=2 SV=2
trembl
ID A0A0B5WQH0
description PT1;3 protein OS=Manihot esculenta GN=PT1;3 PE=2 SV=1
Gene Ontology
ID GO:0016021
description phosphate transporter isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20071: 196781-200362 , PASA_asmbl_20072: 199400-200287 , PASA_asmbl_20073: 196809-202688
cDNA
(Sanger)
(ID:Location)		 001_P04.ab1: 197918-202688 , 015_O10.ab1: 197980-202688

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000002_100 0.0 - - phosphate transporter [Manihot esculenta]
2 Hb_002085_070 0.0892078457 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
3 Hb_000521_290 0.0923528582 - - hypothetical protein POPTR_0001s23530g [Populus trichocarpa]
4 Hb_012018_020 0.1082609079 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Eucalyptus grandis]
5 Hb_001514_100 0.1094239213 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
6 Hb_000177_130 0.1120862262 - - wall-associated kinase, putative [Ricinus communis]
7 Hb_010921_060 0.1215261926 - - ATP binding protein, putative [Ricinus communis]
8 Hb_004459_110 0.122739229 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X2 [Populus euphratica]
9 Hb_000265_020 0.1243523671 - - hypothetical protein POPTR_0011s16980g, partial [Populus trichocarpa]
10 Hb_004880_100 0.125343897 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300-like [Glycine max]
11 Hb_000705_130 0.1315886252 - - conserved hypothetical protein [Ricinus communis]
12 Hb_157980_010 0.1316411974 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
13 Hb_000331_710 0.1333013973 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
14 Hb_033045_010 0.1348126212 - - copine, putative [Ricinus communis]
15 Hb_108055_010 0.1354328338 - - UDP-glucosyltransferase, putative [Ricinus communis]
16 Hb_000395_030 0.1367345108 - - oligopeptide transporter, putative [Ricinus communis]
17 Hb_008667_030 0.1417624356 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
18 Hb_000338_030 0.1433019725 transcription factor TF Family: HB hypothetical protein JCGZ_21254 [Jatropha curcas]
19 Hb_021596_070 0.1434807152 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
20 Hb_000819_010 0.1435939793 - - Receptor-like protein kinase 1, putative [Theobroma cacao]

Gene co-expression network

sample Hb_000002_100 Hb_000002_100 Hb_002085_070 Hb_002085_070 Hb_000002_100--Hb_002085_070 Hb_000521_290 Hb_000521_290 Hb_000002_100--Hb_000521_290 Hb_012018_020 Hb_012018_020 Hb_000002_100--Hb_012018_020 Hb_001514_100 Hb_001514_100 Hb_000002_100--Hb_001514_100 Hb_000177_130 Hb_000177_130 Hb_000002_100--Hb_000177_130 Hb_010921_060 Hb_010921_060 Hb_000002_100--Hb_010921_060 Hb_002085_070--Hb_001514_100 Hb_002085_070--Hb_000521_290 Hb_157980_010 Hb_157980_010 Hb_002085_070--Hb_157980_010 Hb_002085_070--Hb_012018_020 Hb_000265_020 Hb_000265_020 Hb_002085_070--Hb_000265_020 Hb_020648_020 Hb_020648_020 Hb_000521_290--Hb_020648_020 Hb_000521_290--Hb_010921_060 Hb_000338_030 Hb_000338_030 Hb_000521_290--Hb_000338_030 Hb_000521_290--Hb_001514_100 Hb_012018_020--Hb_001514_100 Hb_012018_020--Hb_000265_020 Hb_006970_150 Hb_006970_150 Hb_012018_020--Hb_006970_150 Hb_033045_010 Hb_033045_010 Hb_012018_020--Hb_033045_010 Hb_002294_010 Hb_002294_010 Hb_001514_100--Hb_002294_010 Hb_004230_060 Hb_004230_060 Hb_001514_100--Hb_004230_060 Hb_004880_100 Hb_004880_100 Hb_000177_130--Hb_004880_100 Hb_003077_060 Hb_003077_060 Hb_000177_130--Hb_003077_060 Hb_000412_090 Hb_000412_090 Hb_000177_130--Hb_000412_090 Hb_000705_130 Hb_000705_130 Hb_000177_130--Hb_000705_130 Hb_002890_320 Hb_002890_320 Hb_000177_130--Hb_002890_320 Hb_002239_020 Hb_002239_020 Hb_010921_060--Hb_002239_020 Hb_000819_010 Hb_000819_010 Hb_010921_060--Hb_000819_010 Hb_000465_380 Hb_000465_380 Hb_010921_060--Hb_000465_380 Hb_000668_160 Hb_000668_160 Hb_010921_060--Hb_000668_160 Hb_011344_140 Hb_011344_140 Hb_010921_060--Hb_011344_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0408993 872.552 230.461 80.4225 0.0607095 0.148012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.172299 0.0903714 0.170246 235.212 119.648

CAGE analysis