Hb_000002_110

Information

Type -
Description -
Location Contig2: 245112-246020
Sequence    

Annotation

kegg
ID cam:101511217
description serine/threonine-protein phosphatase PP1-like
nr
ID KCW85297.1
description hypothetical protein EUGRSUZ_B02140 [Eucalyptus grandis]
swissprot
ID P48489
description Serine/threonine-protein phosphatase PP1 OS=Oryza sativa subsp. japonica GN=Os03g0268000 PE=2 SV=2
trembl
ID A0A059D3Y0
description Serine/threonine-protein phosphatase OS=Eucalyptus grandis GN=EUGRSUZ_B02140 PE=3 SV=1
Gene Ontology
ID GO:0004721
description serine threonine-protein phosphatase pp1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000002_110 0.0 - - hypothetical protein EUGRSUZ_B02140 [Eucalyptus grandis]
2 Hb_001433_090 0.0575756746 - - Pectinesterase PPE8B precursor, putative [Ricinus communis]
3 Hb_010589_010 0.0662606309 - - PREDICTED: classical arabinogalactan protein 9-like [Jatropha curcas]
4 Hb_001500_130 0.067618145 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
5 Hb_001397_020 0.0691523838 - - cytochrome P450 family protein [Populus trichocarpa]
6 Hb_005183_050 0.0750046644 - - hypothetical protein RCOM_1590900 [Ricinus communis]
7 Hb_020956_030 0.0819429179 - - PREDICTED: swi5-dependent recombination DNA repair protein 1 homolog [Jatropha curcas]
8 Hb_001657_020 0.0844811777 - - heat shock family protein [Populus trichocarpa]
9 Hb_002477_190 0.0849201568 - - hypothetical protein EUGRSUZ_C03380, partial [Eucalyptus grandis]
10 Hb_003152_020 0.0856864612 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
11 Hb_001541_200 0.0874288509 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
12 Hb_029587_010 0.0877554821 - - G-type lectin S-receptor-like serine/threonine-protein kinase [Glycine soja]
13 Hb_005842_010 0.0888051082 - - nitrate transporter, putative [Ricinus communis]
14 Hb_000017_180 0.0889965582 - - hypothetical protein JCGZ_20551 [Jatropha curcas]
15 Hb_001711_140 0.0897467587 - - Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis]
16 Hb_026549_060 0.0900799165 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
17 Hb_000076_240 0.0913066494 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
18 Hb_005010_030 0.0920466487 - - PREDICTED: lecithin-cholesterol acyltransferase-like 1 [Jatropha curcas]
19 Hb_003549_100 0.0924239898 - - PREDICTED: uncharacterized protein LOC105647410 [Jatropha curcas]
20 Hb_095744_010 0.0941556095 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_000002_110 Hb_000002_110 Hb_001433_090 Hb_001433_090 Hb_000002_110--Hb_001433_090 Hb_010589_010 Hb_010589_010 Hb_000002_110--Hb_010589_010 Hb_001500_130 Hb_001500_130 Hb_000002_110--Hb_001500_130 Hb_001397_020 Hb_001397_020 Hb_000002_110--Hb_001397_020 Hb_005183_050 Hb_005183_050 Hb_000002_110--Hb_005183_050 Hb_020956_030 Hb_020956_030 Hb_000002_110--Hb_020956_030 Hb_026549_060 Hb_026549_060 Hb_001433_090--Hb_026549_060 Hb_001433_090--Hb_010589_010 Hb_001433_090--Hb_005183_050 Hb_001433_090--Hb_001500_130 Hb_001433_090--Hb_020956_030 Hb_010589_010--Hb_001397_020 Hb_029587_010 Hb_029587_010 Hb_010589_010--Hb_029587_010 Hb_003549_100 Hb_003549_100 Hb_010589_010--Hb_003549_100 Hb_010589_010--Hb_001500_130 Hb_005010_030 Hb_005010_030 Hb_001500_130--Hb_005010_030 Hb_000083_210 Hb_000083_210 Hb_001500_130--Hb_000083_210 Hb_002477_190 Hb_002477_190 Hb_001500_130--Hb_002477_190 Hb_001397_020--Hb_003549_100 Hb_002809_180 Hb_002809_180 Hb_001397_020--Hb_002809_180 Hb_003152_020 Hb_003152_020 Hb_001397_020--Hb_003152_020 Hb_010883_160 Hb_010883_160 Hb_001397_020--Hb_010883_160 Hb_000017_180 Hb_000017_180 Hb_005183_050--Hb_000017_180 Hb_005183_050--Hb_003152_020 Hb_005183_050--Hb_026549_060 Hb_005842_010 Hb_005842_010 Hb_005183_050--Hb_005842_010 Hb_003162_060 Hb_003162_060 Hb_020956_030--Hb_003162_060 Hb_001541_200 Hb_001541_200 Hb_020956_030--Hb_001541_200 Hb_020956_030--Hb_026549_060 Hb_086300_010 Hb_086300_010 Hb_020956_030--Hb_086300_010 Hb_001657_020 Hb_001657_020 Hb_020956_030--Hb_001657_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.459499 2.35967 5.83732 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0543245 0 0.154015 7.83755

CAGE analysis