Hb_000002_140

Information

Type -
Description -
Location Contig2: 275284-275826
Sequence    

Annotation

kegg
ID gmx:100808321
description repetitive proline-rich cell wall protein 2-like
nr
ID KDP40320.1
description hypothetical protein JCGZ_02318 [Jatropha curcas]
swissprot
ID Q43564
description Repetitive proline-rich cell wall protein 1 OS=Medicago truncatula GN=PRP1 PE=2 SV=1
trembl
ID A0A067L744
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02318 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20078: 275208-276072
cDNA
(Sanger)
(ID:Location)		 001_F02.ab1: 275261-276022 , 006_G09.ab1: 275261-275981 , 008_J03.ab1: 275263-276047 , 009_F13.ab1: 275283-275759 , 010_C18.ab1: 275260-275971 , 010_G10.ab1: 275259-276042 , 013_M08.ab1: 275259-276047 , 015_E04.ab1: 275259-276044 , 016_F24.ab1: 275208-276023 , 016_P07.ab1: 275263-276047 , 018_B15.ab1: 275261-275956 , 019_D13.ab1: 275261-276052 , 024_E04.ab1: 275261-276032 , 026_I11.ab1: 275255-275970 , 032_H22.ab1: 275261-276001 , 035_N20.ab1: 275263-276031 , 036_B07.ab1: 275261-276042 , 036_K01.ab1: 275261-275974 , 039_N13.ab1: 275259-275639 , 041_A19.ab1: 275263-276052 , 045_M13.ab1: 275241-276032 , 046_P20.ab1: 275263-276034 , 050_M14.ab1: 275208-276023 , 052_I23.ab1: 275261-276031

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000002_140 0.0 - - hypothetical protein JCGZ_02318 [Jatropha curcas]
2 Hb_002162_020 0.0678355482 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
3 Hb_001089_010 0.0760744617 - - PREDICTED: GDSL esterase/lipase 5-like [Jatropha curcas]
4 Hb_012807_030 0.0854866412 - - PREDICTED: uncharacterized protein LOC105628042 isoform X1 [Jatropha curcas]
5 Hb_140249_020 0.0865257512 transcription factor TF Family: MIKC PREDICTED: MADS-box protein CMB1-like [Jatropha curcas]
6 Hb_000008_160 0.0880018245 - - carboxy-lyase, putative [Ricinus communis]
7 Hb_000007_270 0.0951418121 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002093_020 0.0967833319 - - hypothetical protein POPTR_0008s02960g [Populus trichocarpa]
9 Hb_001751_050 0.0996039149 - - PREDICTED: phytol kinase 1, chloroplastic [Jatropha curcas]
10 Hb_000047_100 0.1010995378 transcription factor TF Family: GRF conserved hypothetical protein [Ricinus communis]
11 Hb_001433_080 0.1126383833 - - Pectinesterase precursor, putative [Ricinus communis]
12 Hb_002762_050 0.1149836156 - - PREDICTED: uncharacterized protein LOC105640359 [Jatropha curcas]
13 Hb_124677_010 0.1167142591 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001710_010 0.1204253277 - - Uncharacterized protein TCM_001832 [Theobroma cacao]
15 Hb_007101_120 0.1222063752 - - PREDICTED: uncharacterized protein LOC105649846 [Jatropha curcas]
16 Hb_002870_070 0.1243896002 - - multidrug resistance pump, putative [Ricinus communis]
17 Hb_020805_050 0.1298120255 - - PREDICTED: MLO-like protein 9 [Jatropha curcas]
18 Hb_006665_020 0.1322283322 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
19 Hb_000815_110 0.1333932436 - - RecName: Full=Casparian strip membrane protein 4; Short=RcCASP4 [Ricinus communis]
20 Hb_008143_010 0.1366021814 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]

Gene co-expression network

sample Hb_000002_140 Hb_000002_140 Hb_002162_020 Hb_002162_020 Hb_000002_140--Hb_002162_020 Hb_001089_010 Hb_001089_010 Hb_000002_140--Hb_001089_010 Hb_012807_030 Hb_012807_030 Hb_000002_140--Hb_012807_030 Hb_140249_020 Hb_140249_020 Hb_000002_140--Hb_140249_020 Hb_000008_160 Hb_000008_160 Hb_000002_140--Hb_000008_160 Hb_000007_270 Hb_000007_270 Hb_000002_140--Hb_000007_270 Hb_001710_010 Hb_001710_010 Hb_002162_020--Hb_001710_010 Hb_002162_020--Hb_140249_020 Hb_002162_020--Hb_000008_160 Hb_001433_080 Hb_001433_080 Hb_002162_020--Hb_001433_080 Hb_002162_020--Hb_001089_010 Hb_001089_010--Hb_140249_020 Hb_000815_110 Hb_000815_110 Hb_001089_010--Hb_000815_110 Hb_001089_010--Hb_001433_080 Hb_000165_170 Hb_000165_170 Hb_001089_010--Hb_000165_170 Hb_002762_050 Hb_002762_050 Hb_012807_030--Hb_002762_050 Hb_124677_010 Hb_124677_010 Hb_012807_030--Hb_124677_010 Hb_012807_030--Hb_000008_160 Hb_000866_060 Hb_000866_060 Hb_012807_030--Hb_000866_060 Hb_000128_040 Hb_000128_040 Hb_012807_030--Hb_000128_040 Hb_140249_020--Hb_001433_080 Hb_000047_100 Hb_000047_100 Hb_140249_020--Hb_000047_100 Hb_140249_020--Hb_000815_110 Hb_140249_020--Hb_000007_270 Hb_002093_020 Hb_002093_020 Hb_000008_160--Hb_002093_020 Hb_000185_010 Hb_000185_010 Hb_000008_160--Hb_000185_010 Hb_001751_050 Hb_001751_050 Hb_000008_160--Hb_001751_050 Hb_002870_070 Hb_002870_070 Hb_000008_160--Hb_002870_070 Hb_000008_160--Hb_002762_050 Hb_087599_010 Hb_087599_010 Hb_000008_160--Hb_087599_010 Hb_000007_270--Hb_000047_100 Hb_003106_160 Hb_003106_160 Hb_000007_270--Hb_003106_160 Hb_000007_270--Hb_000815_110 Hb_000007_270--Hb_001433_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 41.0813 3499.1 457.774 0 0.386541
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.159005 337.805 4690.59

CAGE analysis