Hb_000002_170

Information

Type transcription factor
Description TF Family: ERF
Location Contig2: 300997-301656
Sequence    

Annotation

kegg
ID rcu:RCOM_1007740
description Ethylene-responsive transcription factor 1B, putative
nr
ID XP_012069811.1
description PREDICTED: ethylene-responsive transcription factor 1B [Jatropha curcas]
swissprot
ID Q8LDC8
description Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=1 SV=2
trembl
ID A0A067KZD2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02316 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor 1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 023_A06.ab1: 300975-301726 , 040_K06.ab1: 300939-301726

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000002_170 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B [Jatropha curcas]
2 Hb_006277_070 0.1414042603 - - conserved hypothetical protein [Ricinus communis]
3 Hb_023661_060 0.16314125 - - PREDICTED: uncharacterized protein LOC104886268, partial [Beta vulgaris subsp. vulgaris]
4 Hb_002391_330 0.1721174844 - - conserved hypothetical protein [Ricinus communis]
5 Hb_034661_020 0.1729904182 - - hypothetical protein JCGZ_04352 [Jatropha curcas]
6 Hb_012573_010 0.1783584288 - - PREDICTED: uncharacterized protein LOC105639338 [Jatropha curcas]
7 Hb_000962_080 0.180059691 - - PREDICTED: uncharacterized protein LOC105131773 [Populus euphratica]
8 Hb_000002_200 0.2003349546 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF096 [Brassica rapa]
9 Hb_147793_010 0.2022246893 - - PREDICTED: E3 ubiquitin-protein ligase PUB24-like [Jatropha curcas]
10 Hb_051067_010 0.2088779734 - - -
11 Hb_003732_040 0.2199160991 - - putative esterase family protein [Populus trichocarpa]
12 Hb_001892_090 0.2304630993 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000016_070 0.2336929227 transcription factor TF Family: M-type PREDICTED: MADS-box protein SOC1-like, partial [Nicotiana sylvestris]
14 Hb_000019_020 0.2336929227 - - hypothetical protein POPTR_0017s08820g, partial [Populus trichocarpa]
15 Hb_000019_160 0.2336929227 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
16 Hb_000029_230 0.2336929227 - - hypothetical protein ARALYDRAFT_496947 [Arabidopsis lyrata subsp. lyrata]
17 Hb_000032_170 0.2336929227 - - -
18 Hb_000042_170 0.2336929227 transcription factor TF Family: ULT Protein ULTRAPETALA2, putative [Ricinus communis]
19 Hb_000050_210 0.2336929227 - - PREDICTED: uncharacterized protein LOC105797515 [Gossypium raimondii]
20 Hb_000083_100 0.2336929227 - - -

Gene co-expression network

sample Hb_000002_170 Hb_000002_170 Hb_006277_070 Hb_006277_070 Hb_000002_170--Hb_006277_070 Hb_023661_060 Hb_023661_060 Hb_000002_170--Hb_023661_060 Hb_002391_330 Hb_002391_330 Hb_000002_170--Hb_002391_330 Hb_034661_020 Hb_034661_020 Hb_000002_170--Hb_034661_020 Hb_012573_010 Hb_012573_010 Hb_000002_170--Hb_012573_010 Hb_000962_080 Hb_000962_080 Hb_000002_170--Hb_000962_080 Hb_006277_070--Hb_012573_010 Hb_003732_040 Hb_003732_040 Hb_006277_070--Hb_003732_040 Hb_051067_010 Hb_051067_010 Hb_006277_070--Hb_051067_010 Hb_006277_070--Hb_002391_330 Hb_015057_030 Hb_015057_030 Hb_006277_070--Hb_015057_030 Hb_023661_060--Hb_000962_080 Hb_000016_070 Hb_000016_070 Hb_023661_060--Hb_000016_070 Hb_000019_020 Hb_000019_020 Hb_023661_060--Hb_000019_020 Hb_000019_160 Hb_000019_160 Hb_023661_060--Hb_000019_160 Hb_000029_230 Hb_000029_230 Hb_023661_060--Hb_000029_230 Hb_002391_330--Hb_034661_020 Hb_000002_200 Hb_000002_200 Hb_002391_330--Hb_000002_200 Hb_002391_330--Hb_000016_070 Hb_002391_330--Hb_000019_020 Hb_002391_330--Hb_000019_160 Hb_034661_020--Hb_000002_200 Hb_001627_030 Hb_001627_030 Hb_034661_020--Hb_001627_030 Hb_147793_010 Hb_147793_010 Hb_034661_020--Hb_147793_010 Hb_000111_020 Hb_000111_020 Hb_034661_020--Hb_000111_020 Hb_096292_010 Hb_096292_010 Hb_034661_020--Hb_096292_010 Hb_185736_010 Hb_185736_010 Hb_034661_020--Hb_185736_010 Hb_000258_180 Hb_000258_180 Hb_012573_010--Hb_000258_180 Hb_000012_070 Hb_000012_070 Hb_012573_010--Hb_000012_070 Hb_000284_190 Hb_000284_190 Hb_012573_010--Hb_000284_190 Hb_000062_300 Hb_000062_300 Hb_012573_010--Hb_000062_300 Hb_001247_330 Hb_001247_330 Hb_000962_080--Hb_001247_330 Hb_001767_050 Hb_001767_050 Hb_000962_080--Hb_001767_050 Hb_000703_050 Hb_000703_050 Hb_000962_080--Hb_000703_050 Hb_001369_210 Hb_001369_210 Hb_000962_080--Hb_001369_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.379889 4.78144 0.327505 2.11456 0.178324 0.371251
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.58051 351.6 13.3435 9.64025 0.54242

CAGE analysis