Hb_000002_230

Information

Type -
Description -
Location Contig2: 388184-389266
Sequence    

Annotation

kegg
ID tcc:TCM_020868
description RING/U-box superfamily protein
nr
ID XP_007035090.1
description RING/U-box superfamily protein [Theobroma cacao]
swissprot
ID Q9LSW9
description RING-H2 finger protein ATL16 OS=Arabidopsis thaliana GN=ATL16 PE=2 SV=1
trembl
ID A0A061EMD3
description RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_020868 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl16-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000002_230 0.0 - - RING/U-box superfamily protein [Theobroma cacao]
2 Hb_000203_150 0.095785967 - - PREDICTED: uncharacterized protein LOC105116038 [Populus euphratica]
3 Hb_002894_040 0.1120127809 - - conserved hypothetical protein [Ricinus communis]
4 Hb_179118_010 0.1147950103 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
5 Hb_183209_020 0.1152985364 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X2 [Jatropha curcas]
6 Hb_004590_010 0.1197727031 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
7 Hb_183820_010 0.1230993501 - - Disease resistance protein RFL1, putative [Ricinus communis]
8 Hb_001013_060 0.1264102833 - - -
9 Hb_050898_010 0.1269140796 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
10 Hb_007313_050 0.127195864 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
11 Hb_002053_090 0.1279797917 - - conserved hypothetical protein [Ricinus communis]
12 Hb_106728_020 0.1340302315 - - cytochrome P450, putative [Ricinus communis]
13 Hb_003939_090 0.1355835948 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
14 Hb_001610_060 0.1389522382 - - hypothetical protein TRIUR3_12067 [Triticum urartu]
15 Hb_001277_420 0.1422768365 - - PREDICTED: protein lin-12-like isoform X2 [Populus euphratica]
16 Hb_035006_010 0.1438155522 - - hypothetical protein POPTR_0017s11350g [Populus trichocarpa]
17 Hb_000032_340 0.143859958 - - PREDICTED: uncharacterized protein LOC105645669 [Jatropha curcas]
18 Hb_021443_020 0.1444473452 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
19 Hb_000510_210 0.14534066 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
20 Hb_005900_020 0.1470541106 - - -

Gene co-expression network

sample Hb_000002_230 Hb_000002_230 Hb_000203_150 Hb_000203_150 Hb_000002_230--Hb_000203_150 Hb_002894_040 Hb_002894_040 Hb_000002_230--Hb_002894_040 Hb_179118_010 Hb_179118_010 Hb_000002_230--Hb_179118_010 Hb_183209_020 Hb_183209_020 Hb_000002_230--Hb_183209_020 Hb_004590_010 Hb_004590_010 Hb_000002_230--Hb_004590_010 Hb_183820_010 Hb_183820_010 Hb_000002_230--Hb_183820_010 Hb_001013_060 Hb_001013_060 Hb_000203_150--Hb_001013_060 Hb_001610_060 Hb_001610_060 Hb_000203_150--Hb_001610_060 Hb_000032_340 Hb_000032_340 Hb_000203_150--Hb_000032_340 Hb_000720_060 Hb_000720_060 Hb_000203_150--Hb_000720_060 Hb_000203_150--Hb_183209_020 Hb_007403_010 Hb_007403_010 Hb_002894_040--Hb_007403_010 Hb_010614_020 Hb_010614_020 Hb_002894_040--Hb_010614_020 Hb_008959_050 Hb_008959_050 Hb_002894_040--Hb_008959_050 Hb_007313_050 Hb_007313_050 Hb_002894_040--Hb_007313_050 Hb_004218_220 Hb_004218_220 Hb_002894_040--Hb_004218_220 Hb_179118_010--Hb_004590_010 Hb_012395_150 Hb_012395_150 Hb_179118_010--Hb_012395_150 Hb_106728_020 Hb_106728_020 Hb_179118_010--Hb_106728_020 Hb_000510_210 Hb_000510_210 Hb_179118_010--Hb_000510_210 Hb_012879_010 Hb_012879_010 Hb_179118_010--Hb_012879_010 Hb_005900_020 Hb_005900_020 Hb_179118_010--Hb_005900_020 Hb_050898_010 Hb_050898_010 Hb_183209_020--Hb_050898_010 Hb_103541_010 Hb_103541_010 Hb_183209_020--Hb_103541_010 Hb_189034_010 Hb_189034_010 Hb_183209_020--Hb_189034_010 Hb_000137_030 Hb_000137_030 Hb_183209_020--Hb_000137_030 Hb_004590_010--Hb_012395_150 Hb_004590_010--Hb_012879_010 Hb_004590_010--Hb_005900_020 Hb_004590_010--Hb_106728_020 Hb_136884_010 Hb_136884_010 Hb_183820_010--Hb_136884_010 Hb_183820_010--Hb_012395_150 Hb_000365_290 Hb_000365_290 Hb_183820_010--Hb_000365_290 Hb_006020_010 Hb_006020_010 Hb_183820_010--Hb_006020_010 Hb_183820_010--Hb_004590_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0200793 3.23918 0.613385 5.03226 0.0188167 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.87064 0.222914

CAGE analysis