Hb_000002_240

Information

Type -
Description -
Location Contig2: 391886-394391
Sequence    

Annotation

kegg
ID rcu:RCOM_0491730
description DNA binding protein, putative
nr
ID XP_012069805.1
description PREDICTED: transcription factor bHLH104 [Jatropha curcas]
swissprot
ID Q8L467
description Transcription factor bHLH104 OS=Arabidopsis thaliana GN=BHLH104 PE=2 SV=1
trembl
ID A0A067KZD1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02311 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor bhlh104

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20082: 391956-394412
cDNA
(Sanger)
(ID:Location)		 022_C18.ab1: 391954-394222

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000002_240 0.0 - - PREDICTED: transcription factor bHLH104 [Jatropha curcas]
2 Hb_000111_180 0.0945700227 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
3 Hb_003147_060 0.1097323676 - - syntaxin, plant, putative [Ricinus communis]
4 Hb_002110_160 0.1101123388 - - PREDICTED: phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [Jatropha curcas]
5 Hb_010775_030 0.1110364742 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
6 Hb_000375_290 0.1126524426 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
7 Hb_004870_050 0.1130710996 - - PREDICTED: ATP-dependent RNA helicase DBP3 [Jatropha curcas]
8 Hb_001671_040 0.1150521682 - - PREDICTED: serine/arginine-rich splicing factor RS31-like isoform X1 [Populus euphratica]
9 Hb_004648_090 0.1163664665 - - peroxisomal biogenesis factor, putative [Ricinus communis]
10 Hb_009545_090 0.1170525888 - - hypothetical protein JCGZ_02186 [Jatropha curcas]
11 Hb_002228_110 0.1187372758 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]
12 Hb_000925_030 0.1208077849 - - ATP-dependent RNA helicase, putative [Ricinus communis]
13 Hb_000086_420 0.1209266829 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
14 Hb_001245_050 0.1216318242 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
15 Hb_006588_210 0.1246909725 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
16 Hb_001225_030 0.1250306048 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 1 [Jatropha curcas]
17 Hb_000358_230 0.1256963481 - - protein phosphatases pp1 regulatory subunit, putative [Ricinus communis]
18 Hb_006452_180 0.1261932374 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
19 Hb_003682_030 0.1262495795 - - hypothetical protein CICLE_v10020876mg [Citrus clementina]
20 Hb_000087_060 0.1264399707 - - protein transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000002_240 Hb_000002_240 Hb_000111_180 Hb_000111_180 Hb_000002_240--Hb_000111_180 Hb_003147_060 Hb_003147_060 Hb_000002_240--Hb_003147_060 Hb_002110_160 Hb_002110_160 Hb_000002_240--Hb_002110_160 Hb_010775_030 Hb_010775_030 Hb_000002_240--Hb_010775_030 Hb_000375_290 Hb_000375_290 Hb_000002_240--Hb_000375_290 Hb_004870_050 Hb_004870_050 Hb_000002_240--Hb_004870_050 Hb_000318_480 Hb_000318_480 Hb_000111_180--Hb_000318_480 Hb_006588_210 Hb_006588_210 Hb_000111_180--Hb_006588_210 Hb_014068_050 Hb_014068_050 Hb_000111_180--Hb_014068_050 Hb_000260_180 Hb_000260_180 Hb_000111_180--Hb_000260_180 Hb_007441_110 Hb_007441_110 Hb_000111_180--Hb_007441_110 Hb_003925_040 Hb_003925_040 Hb_003147_060--Hb_003925_040 Hb_000925_030 Hb_000925_030 Hb_003147_060--Hb_000925_030 Hb_002869_050 Hb_002869_050 Hb_003147_060--Hb_002869_050 Hb_006452_180 Hb_006452_180 Hb_003147_060--Hb_006452_180 Hb_004108_240 Hb_004108_240 Hb_003147_060--Hb_004108_240 Hb_009545_090 Hb_009545_090 Hb_003147_060--Hb_009545_090 Hb_000282_090 Hb_000282_090 Hb_002110_160--Hb_000282_090 Hb_002110_160--Hb_010775_030 Hb_010287_020 Hb_010287_020 Hb_002110_160--Hb_010287_020 Hb_000207_200 Hb_000207_200 Hb_002110_160--Hb_000207_200 Hb_002110_160--Hb_004870_050 Hb_000868_120 Hb_000868_120 Hb_002110_160--Hb_000868_120 Hb_001357_310 Hb_001357_310 Hb_010775_030--Hb_001357_310 Hb_002014_010 Hb_002014_010 Hb_010775_030--Hb_002014_010 Hb_006588_060 Hb_006588_060 Hb_010775_030--Hb_006588_060 Hb_000086_420 Hb_000086_420 Hb_010775_030--Hb_000086_420 Hb_171900_090 Hb_171900_090 Hb_010775_030--Hb_171900_090 Hb_001225_030 Hb_001225_030 Hb_000375_290--Hb_001225_030 Hb_000375_290--Hb_004870_050 Hb_000048_080 Hb_000048_080 Hb_000375_290--Hb_000048_080 Hb_001558_060 Hb_001558_060 Hb_000375_290--Hb_001558_060 Hb_000579_190 Hb_000579_190 Hb_000375_290--Hb_000579_190 Hb_023226_070 Hb_023226_070 Hb_000375_290--Hb_023226_070 Hb_060094_020 Hb_060094_020 Hb_004870_050--Hb_060094_020 Hb_003927_040 Hb_003927_040 Hb_004870_050--Hb_003927_040 Hb_000094_090 Hb_000094_090 Hb_004870_050--Hb_000094_090 Hb_004870_050--Hb_000282_090 Hb_004648_090 Hb_004648_090 Hb_004870_050--Hb_004648_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.9841 34.277 30.1057 18.7367 11.1094 13.8909
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.57478 27.395 7.72333 14.1898 8.27041

CAGE analysis