Hb_000002_270

Information

Type -
Description -
Location Contig2: 402614-418252
Sequence    

Annotation

kegg
ID fve:101313887
description 1-aminocyclopropane-1-carboxylate oxidase homolog 3-like
nr
ID CAN82828.1
description hypothetical protein VITISV_043897 [Vitis vinifera]
swissprot
ID Q84MB3
description 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1
trembl
ID A0A0D3C845
description Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1
Gene Ontology
ID GO:0045431
description 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20087: 404094-404386 , PASA_asmbl_20089: 416204-416662 , PASA_asmbl_20090: 416831-417053
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000002_270 0.0 - - hypothetical protein VITISV_043897 [Vitis vinifera]
2 Hb_111985_040 0.1073535989 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 3 [Jatropha curcas]
3 Hb_000302_200 0.1185334818 - - ornithine cyclodeaminase, putative [Ricinus communis]
4 Hb_000792_040 0.1207203191 - - PREDICTED: steroid 5-alpha-reductase DET2 [Jatropha curcas]
5 Hb_000081_120 0.1383558387 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
6 Hb_003398_070 0.1434040762 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
7 Hb_007576_200 0.1564825082 - - amino acid transporter, putative [Ricinus communis]
8 Hb_003544_070 0.1590105627 - - conserved hypothetical protein [Ricinus communis]
9 Hb_008246_020 0.1610261774 - - amidophosphoribosyltransferase, putative [Ricinus communis]
10 Hb_000789_240 0.1616679428 - - gamma glutamyl transpeptidases, putative [Ricinus communis]
11 Hb_002122_080 0.1620796121 - - -
12 Hb_049436_010 0.1629102683 - - PREDICTED: UPF0202 protein At1g10490-like [Glycine max]
13 Hb_004109_380 0.1663464306 - - PREDICTED: callose synthase 9 isoform X4 [Pyrus x bretschneideri]
14 Hb_001828_020 0.166608539 - - hypothetical protein CISIN_1g010132mg [Citrus sinensis]
15 Hb_001625_010 0.1674422284 - - PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Jatropha curcas]
16 Hb_020805_170 0.1681784322 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
17 Hb_004994_090 0.1682705205 - - PREDICTED: uncharacterized protein LOC105643033 isoform X2 [Jatropha curcas]
18 Hb_000676_040 0.1688310711 - - hypothetical protein POPTR_0007s13320g [Populus trichocarpa]
19 Hb_002153_030 0.1706441074 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
20 Hb_008511_100 0.1713623579 - - hypothetical protein POPTR_0009s11860g [Populus trichocarpa]

Gene co-expression network

sample Hb_000002_270 Hb_000002_270 Hb_111985_040 Hb_111985_040 Hb_000002_270--Hb_111985_040 Hb_000302_200 Hb_000302_200 Hb_000002_270--Hb_000302_200 Hb_000792_040 Hb_000792_040 Hb_000002_270--Hb_000792_040 Hb_000081_120 Hb_000081_120 Hb_000002_270--Hb_000081_120 Hb_003398_070 Hb_003398_070 Hb_000002_270--Hb_003398_070 Hb_007576_200 Hb_007576_200 Hb_000002_270--Hb_007576_200 Hb_013749_060 Hb_013749_060 Hb_111985_040--Hb_013749_060 Hb_001410_010 Hb_001410_010 Hb_111985_040--Hb_001410_010 Hb_111985_040--Hb_000792_040 Hb_002122_080 Hb_002122_080 Hb_111985_040--Hb_002122_080 Hb_001625_010 Hb_001625_010 Hb_111985_040--Hb_001625_010 Hb_000302_200--Hb_000792_040 Hb_004994_090 Hb_004994_090 Hb_000302_200--Hb_004994_090 Hb_006501_160 Hb_006501_160 Hb_000302_200--Hb_006501_160 Hb_001031_090 Hb_001031_090 Hb_000302_200--Hb_001031_090 Hb_005215_020 Hb_005215_020 Hb_000302_200--Hb_005215_020 Hb_002995_040 Hb_002995_040 Hb_000302_200--Hb_002995_040 Hb_185830_070 Hb_185830_070 Hb_000792_040--Hb_185830_070 Hb_004450_070 Hb_004450_070 Hb_000792_040--Hb_004450_070 Hb_000792_040--Hb_007576_200 Hb_000792_040--Hb_006501_160 Hb_008246_020 Hb_008246_020 Hb_000792_040--Hb_008246_020 Hb_000081_120--Hb_000302_200 Hb_000081_120--Hb_000792_040 Hb_000645_240 Hb_000645_240 Hb_000081_120--Hb_000645_240 Hb_001322_180 Hb_001322_180 Hb_000081_120--Hb_001322_180 Hb_000227_330 Hb_000227_330 Hb_000081_120--Hb_000227_330 Hb_065500_030 Hb_065500_030 Hb_003398_070--Hb_065500_030 Hb_002005_120 Hb_002005_120 Hb_003398_070--Hb_002005_120 Hb_002233_020 Hb_002233_020 Hb_003398_070--Hb_002233_020 Hb_003544_070 Hb_003544_070 Hb_003398_070--Hb_003544_070 Hb_000856_020 Hb_000856_020 Hb_003398_070--Hb_000856_020 Hb_002400_140 Hb_002400_140 Hb_003398_070--Hb_002400_140 Hb_003747_210 Hb_003747_210 Hb_007576_200--Hb_003747_210 Hb_000371_060 Hb_000371_060 Hb_007576_200--Hb_000371_060 Hb_000676_040 Hb_000676_040 Hb_007576_200--Hb_000676_040 Hb_000656_150 Hb_000656_150 Hb_007576_200--Hb_000656_150 Hb_007576_200--Hb_000302_200 Hb_007576_200--Hb_002122_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.52389 11.366 0.798996 5.24944 1.45789 2.65112
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.51292 3.082 1.12458 9.6502 4.36481

CAGE analysis