Hb_000002_280

Information

Type -
Description -
Location Contig2: 435659-437038
Sequence    

Annotation

kegg
ID rcu:RCOM_0491900
description Calcium-activated outward-rectifying potassium channel, putative
nr
ID XP_012071021.1
description PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
swissprot
ID Q8LBL1
description Two-pore potassium channel 1 OS=Arabidopsis thaliana GN=TPK1 PE=1 SV=2
trembl
ID A0A067KSV6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01038 PE=4 SV=1
Gene Ontology
ID GO:0016020
description two-pore potassium channel 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20091: 435795-436309
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000002_280 0.0 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
2 Hb_000300_240 0.1132512037 - - Sodium/potassium/calcium exchanger 6 precursor, putative [Ricinus communis]
3 Hb_002092_140 0.1163063087 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
4 Hb_166828_010 0.11852582 - - -
5 Hb_002571_050 0.1353658901 - - PREDICTED: cation/calcium exchanger 1 [Jatropha curcas]
6 Hb_080873_010 0.1414719896 - - -
7 Hb_010091_040 0.1488874512 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
8 Hb_000320_170 0.1524260618 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001899_040 0.1616328618 - - PREDICTED: cyclic nucleotide-gated ion channel 2-like [Jatropha curcas]
10 Hb_002836_030 0.1628330102 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
11 Hb_002284_040 0.1629759278 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
12 Hb_003582_050 0.1654790534 - - hypothetical protein POPTR_0008s13950g [Populus trichocarpa]
13 Hb_144813_010 0.1750062128 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
14 Hb_000640_280 0.1760506756 - - Stachyose synthase precursor, putative [Ricinus communis]
15 Hb_002221_020 0.1783643233 - - hypothetical protein B456_008G083700 [Gossypium raimondii]
16 Hb_052764_010 0.178435514 - - hypothetical protein POPTR_0011s04320g [Populus trichocarpa]
17 Hb_000892_040 0.1791075981 - - -
18 Hb_000243_310 0.1818616856 - - lactoylglutathione lyase, putative [Ricinus communis]
19 Hb_011344_150 0.1963129671 - - polyprotein [Citrus endogenous pararetrovirus]
20 Hb_007590_040 0.1994160005 - - PREDICTED: vacuolar cation/proton exchanger 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000002_280 Hb_000002_280 Hb_000300_240 Hb_000300_240 Hb_000002_280--Hb_000300_240 Hb_002092_140 Hb_002092_140 Hb_000002_280--Hb_002092_140 Hb_166828_010 Hb_166828_010 Hb_000002_280--Hb_166828_010 Hb_002571_050 Hb_002571_050 Hb_000002_280--Hb_002571_050 Hb_080873_010 Hb_080873_010 Hb_000002_280--Hb_080873_010 Hb_010091_040 Hb_010091_040 Hb_000002_280--Hb_010091_040 Hb_000300_240--Hb_166828_010 Hb_000300_240--Hb_002092_140 Hb_000320_170 Hb_000320_170 Hb_000300_240--Hb_000320_170 Hb_002836_030 Hb_002836_030 Hb_000300_240--Hb_002836_030 Hb_003582_050 Hb_003582_050 Hb_000300_240--Hb_003582_050 Hb_002092_140--Hb_166828_010 Hb_002092_140--Hb_080873_010 Hb_002092_140--Hb_000320_170 Hb_002092_140--Hb_002836_030 Hb_002092_140--Hb_003582_050 Hb_166828_010--Hb_000320_170 Hb_166828_010--Hb_002836_030 Hb_166828_010--Hb_003582_050 Hb_166828_010--Hb_080873_010 Hb_144813_010 Hb_144813_010 Hb_166828_010--Hb_144813_010 Hb_002221_020 Hb_002221_020 Hb_002571_050--Hb_002221_020 Hb_001899_040 Hb_001899_040 Hb_002571_050--Hb_001899_040 Hb_005081_090 Hb_005081_090 Hb_002571_050--Hb_005081_090 Hb_000915_220 Hb_000915_220 Hb_002571_050--Hb_000915_220 Hb_002571_050--Hb_000300_240 Hb_000892_040 Hb_000892_040 Hb_080873_010--Hb_000892_040 Hb_002284_040 Hb_002284_040 Hb_080873_010--Hb_002284_040 Hb_000501_180 Hb_000501_180 Hb_080873_010--Hb_000501_180 Hb_052764_010 Hb_052764_010 Hb_010091_040--Hb_052764_010 Hb_000205_220 Hb_000205_220 Hb_010091_040--Hb_000205_220 Hb_010091_040--Hb_002284_040 Hb_007858_030 Hb_007858_030 Hb_010091_040--Hb_007858_030 Hb_042141_010 Hb_042141_010 Hb_010091_040--Hb_042141_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 57.3379 0.950076 0.0955765 0.120721 0.0358603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0617947 0 1.01442 25.8077

CAGE analysis