Hb_000002_310

Information

Type -
Description -
Location Contig2: 473226-476246
Sequence    

Annotation

kegg
ID rcu:RCOM_0491950
description hypothetical protein
nr
ID XP_012069798.1
description PREDICTED: uncharacterized protein LOC105632109 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KVT1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02299 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20095: 473319-476149
cDNA
(Sanger)
(ID:Location)		 016_E20.ab1: 475365-476112 , 019_E04.ab1: 473618-476063 , 030_G02.ab1: 475460-476112

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000002_310 0.0 - - PREDICTED: uncharacterized protein LOC105632109 [Jatropha curcas]
2 Hb_000398_060 0.1377027985 - - PREDICTED: survival of motor neuron-related-splicing factor 30 [Jatropha curcas]
3 Hb_005288_130 0.1464102034 - - protein with unknown function [Ricinus communis]
4 Hb_002301_100 0.1497994012 - - hypothetical protein JCGZ_21479 [Jatropha curcas]
5 Hb_000116_490 0.1526282482 - - PREDICTED: WD repeat-containing protein 55 homolog [Jatropha curcas]
6 Hb_000875_080 0.1534988383 - - PREDICTED: (+)-delta-cadinene synthase isozyme XC14-like isoform X2 [Gossypium raimondii]
7 Hb_001369_300 0.1580881891 - - PREDICTED: structural maintenance of chromosomes protein 2-1-like [Jatropha curcas]
8 Hb_011282_020 0.1608719439 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
9 Hb_000510_340 0.1609354754 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
10 Hb_008304_020 0.163222162 - - PREDICTED: ATP-dependent RNA helicase DBP2-like [Jatropha curcas]
11 Hb_007185_040 0.1652895471 - - PREDICTED: pyrroline-5-carboxylate reductase [Jatropha curcas]
12 Hb_000076_220 0.1653367991 - - thioredoxin domain-containing protein, putative [Ricinus communis]
13 Hb_000663_060 0.165371156 - - hypothetical protein JCGZ_16277 [Jatropha curcas]
14 Hb_000076_210 0.1653741523 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
15 Hb_001828_180 0.1664315218 - - 26S proteasome regulatory subunit S3, putative [Ricinus communis]
16 Hb_001898_050 0.1674122274 - - PREDICTED: 60S ribosomal protein L3 [Eucalyptus grandis]
17 Hb_005271_040 0.168018991 - - PREDICTED: serine racemase [Jatropha curcas]
18 Hb_001493_150 0.1688960269 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
19 Hb_005883_080 0.1693149424 - - type 2A protein phosphatase-2 [Populus trichocarpa]
20 Hb_006570_160 0.1696327683 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]

Gene co-expression network

sample Hb_000002_310 Hb_000002_310 Hb_000398_060 Hb_000398_060 Hb_000002_310--Hb_000398_060 Hb_005288_130 Hb_005288_130 Hb_000002_310--Hb_005288_130 Hb_002301_100 Hb_002301_100 Hb_000002_310--Hb_002301_100 Hb_000116_490 Hb_000116_490 Hb_000002_310--Hb_000116_490 Hb_000875_080 Hb_000875_080 Hb_000002_310--Hb_000875_080 Hb_001369_300 Hb_001369_300 Hb_000002_310--Hb_001369_300 Hb_000398_060--Hb_002301_100 Hb_000398_060--Hb_005288_130 Hb_000363_190 Hb_000363_190 Hb_000398_060--Hb_000363_190 Hb_001828_180 Hb_001828_180 Hb_000398_060--Hb_001828_180 Hb_012733_040 Hb_012733_040 Hb_000398_060--Hb_012733_040 Hb_001269_130 Hb_001269_130 Hb_000398_060--Hb_001269_130 Hb_005288_130--Hb_000116_490 Hb_163175_010 Hb_163175_010 Hb_005288_130--Hb_163175_010 Hb_000840_200 Hb_000840_200 Hb_005288_130--Hb_000840_200 Hb_065525_080 Hb_065525_080 Hb_005288_130--Hb_065525_080 Hb_000663_060 Hb_000663_060 Hb_005288_130--Hb_000663_060 Hb_002301_100--Hb_012733_040 Hb_002301_100--Hb_001828_180 Hb_002301_100--Hb_000363_190 Hb_001242_120 Hb_001242_120 Hb_002301_100--Hb_001242_120 Hb_001493_150 Hb_001493_150 Hb_002301_100--Hb_001493_150 Hb_001804_080 Hb_001804_080 Hb_000116_490--Hb_001804_080 Hb_032202_100 Hb_032202_100 Hb_000116_490--Hb_032202_100 Hb_000946_090 Hb_000946_090 Hb_000116_490--Hb_000946_090 Hb_002303_020 Hb_002303_020 Hb_000116_490--Hb_002303_020 Hb_000270_310 Hb_000270_310 Hb_000116_490--Hb_000270_310 Hb_000336_210 Hb_000336_210 Hb_000875_080--Hb_000336_210 Hb_002272_050 Hb_002272_050 Hb_000875_080--Hb_002272_050 Hb_000049_140 Hb_000049_140 Hb_000875_080--Hb_000049_140 Hb_000297_160 Hb_000297_160 Hb_000875_080--Hb_000297_160 Hb_005271_040 Hb_005271_040 Hb_000875_080--Hb_005271_040 Hb_171900_090 Hb_171900_090 Hb_000875_080--Hb_171900_090 Hb_001660_100 Hb_001660_100 Hb_001369_300--Hb_001660_100 Hb_001357_310 Hb_001357_310 Hb_001369_300--Hb_001357_310 Hb_000510_340 Hb_000510_340 Hb_001369_300--Hb_000510_340 Hb_000402_150 Hb_000402_150 Hb_001369_300--Hb_000402_150 Hb_001369_300--Hb_005271_040 Hb_001369_300--Hb_000875_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.12642 3.23032 14.2014 8.74271 9.40836 2.16449
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.50093 11.0848 3.52411 16.333 7.91437

CAGE analysis