Hb_000002_330

Information

Type -
Description -
Location Contig2: 485100-506044
Sequence    

Annotation

kegg
ID rcu:RCOM_0491970
description hypothetical protein
nr
ID XP_012069796.1
description PREDICTED: actin-related protein 9 [Jatropha curcas]
swissprot
ID A2XQX0
description Actin-related protein 9 OS=Oryza sativa subsp. indica GN=ARP9 PE=3 SV=2
trembl
ID A0A067L890
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02297 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20096: 503799-504629 , PASA_asmbl_20097: 505672-506226
cDNA
(Sanger)
(ID:Location)		 043_A11.ab1: 505672-506226

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000002_330 0.0 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
2 Hb_000236_320 0.0862932214 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
3 Hb_006816_500 0.0887927413 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
4 Hb_000322_050 0.0914350325 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
5 Hb_003453_020 0.0976794841 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
6 Hb_004096_170 0.099299214 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
7 Hb_000645_150 0.0997150487 - - zinc finger protein, putative [Ricinus communis]
8 Hb_008406_160 0.1011240939 - - PREDICTED: ADP,ATP carrier protein 3, mitochondrial [Jatropha curcas]
9 Hb_000258_410 0.1049161634 - - PREDICTED: uncharacterized protein LOC105630409 [Jatropha curcas]
10 Hb_003605_070 0.1050885503 - - PREDICTED: angio-associated migratory cell protein [Jatropha curcas]
11 Hb_003073_200 0.1077261842 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
12 Hb_005527_050 0.1080158964 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
13 Hb_000236_370 0.1081160917 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
14 Hb_003464_110 0.1086552398 - - 3-deoxy-d-manno-octulosonic-acid transferase, putative [Ricinus communis]
15 Hb_000879_140 0.1087204478 - - PREDICTED: uncharacterized protein DDB_G0283697-like isoform X2 [Jatropha curcas]
16 Hb_012305_070 0.1107740113 - - conserved hypothetical protein [Ricinus communis]
17 Hb_143629_010 0.1114397835 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
18 Hb_055590_010 0.1127972439 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000209_090 0.1135051402 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
20 Hb_001946_260 0.1142281004 - - PREDICTED: ribosome biogenesis regulatory protein homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000002_330 Hb_000002_330 Hb_000236_320 Hb_000236_320 Hb_000002_330--Hb_000236_320 Hb_006816_500 Hb_006816_500 Hb_000002_330--Hb_006816_500 Hb_000322_050 Hb_000322_050 Hb_000002_330--Hb_000322_050 Hb_003453_020 Hb_003453_020 Hb_000002_330--Hb_003453_020 Hb_004096_170 Hb_004096_170 Hb_000002_330--Hb_004096_170 Hb_000645_150 Hb_000645_150 Hb_000002_330--Hb_000645_150 Hb_018663_020 Hb_018663_020 Hb_000236_320--Hb_018663_020 Hb_012305_070 Hb_012305_070 Hb_000236_320--Hb_012305_070 Hb_005914_230 Hb_005914_230 Hb_000236_320--Hb_005914_230 Hb_003384_030 Hb_003384_030 Hb_000236_320--Hb_003384_030 Hb_000236_320--Hb_003453_020 Hb_004310_060 Hb_004310_060 Hb_000236_320--Hb_004310_060 Hb_000141_060 Hb_000141_060 Hb_006816_500--Hb_000141_060 Hb_143766_090 Hb_143766_090 Hb_006816_500--Hb_143766_090 Hb_010128_130 Hb_010128_130 Hb_006816_500--Hb_010128_130 Hb_006816_500--Hb_000322_050 Hb_003544_090 Hb_003544_090 Hb_006816_500--Hb_003544_090 Hb_000322_050--Hb_003453_020 Hb_000012_090 Hb_000012_090 Hb_000322_050--Hb_000012_090 Hb_028639_060 Hb_028639_060 Hb_000322_050--Hb_028639_060 Hb_003728_020 Hb_003728_020 Hb_000322_050--Hb_003728_020 Hb_001221_230 Hb_001221_230 Hb_000322_050--Hb_001221_230 Hb_000032_570 Hb_000032_570 Hb_000322_050--Hb_000032_570 Hb_003453_020--Hb_004096_170 Hb_000176_110 Hb_000176_110 Hb_003453_020--Hb_000176_110 Hb_005527_050 Hb_005527_050 Hb_003453_020--Hb_005527_050 Hb_003453_020--Hb_000012_090 Hb_003453_020--Hb_012305_070 Hb_000847_070 Hb_000847_070 Hb_004096_170--Hb_000847_070 Hb_007441_340 Hb_007441_340 Hb_004096_170--Hb_007441_340 Hb_000172_120 Hb_000172_120 Hb_004096_170--Hb_000172_120 Hb_002044_090 Hb_002044_090 Hb_004096_170--Hb_002044_090 Hb_004813_010 Hb_004813_010 Hb_004096_170--Hb_004813_010 Hb_000236_370 Hb_000236_370 Hb_000645_150--Hb_000236_370 Hb_002097_090 Hb_002097_090 Hb_000645_150--Hb_002097_090 Hb_006913_040 Hb_006913_040 Hb_000645_150--Hb_006913_040 Hb_000645_150--Hb_012305_070 Hb_000186_280 Hb_000186_280 Hb_000645_150--Hb_000186_280 Hb_001829_010 Hb_001829_010 Hb_000645_150--Hb_001829_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.31798 0.768236 0.479414 0.334494 2.98937 2.2336
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.7773 1.58242 0.697238 1.24486 0.155396

CAGE analysis