Hb_000002_390

Information

Type -
Description -
Location Contig2: 564913-565770
Sequence    

Annotation

kegg
ID rcu:RCOM_0492430
description DNA binding protein, putative
nr
ID XP_002529315.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q8GWQ2
description AT-hook motif nuclear-localized protein 20 OS=Arabidopsis thaliana GN=AHL20 PE=2 SV=1
trembl
ID B9STJ6
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0492430 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-binding protein partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000002_390 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_000548_040 0.1271831231 rubber biosynthesis Gene Name: CPT1 cis-prenyltransferase1 [Hevea brasiliensis]
3 Hb_010872_060 0.1667351295 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
4 Hb_001425_120 0.1678892138 - - PREDICTED: isoprenylcysteine alpha-carbonyl methylesterase ICME isoform X2 [Jatropha curcas]
5 Hb_012347_010 0.1724926051 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
6 Hb_000957_040 0.1769476655 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
7 Hb_001631_070 0.1780028248 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
8 Hb_000130_390 0.1792120299 - - PREDICTED: glutamate receptor 2.8-like [Pyrus x bretschneideri]
9 Hb_003745_010 0.1793036186 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
10 Hb_004705_030 0.183622677 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003756_010 0.1874956811 - - PREDICTED: uncharacterized protein LOC105642108 [Jatropha curcas]
12 Hb_002027_300 0.1885407657 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
13 Hb_001993_020 0.1887608902 - - hypothetical protein JCGZ_02641 [Jatropha curcas]
14 Hb_001315_020 0.1912198534 - - ring finger protein, putative [Ricinus communis]
15 Hb_001140_160 0.1920275419 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
16 Hb_000720_180 0.1935790744 - - -
17 Hb_000107_650 0.1988944842 - - PREDICTED: cyclic phosphodiesterase-like [Jatropha curcas]
18 Hb_060668_010 0.1998428706 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
19 Hb_012799_060 0.2034565039 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
20 Hb_000500_310 0.2054612807 - - -

Gene co-expression network

sample Hb_000002_390 Hb_000002_390 Hb_000548_040 Hb_000548_040 Hb_000002_390--Hb_000548_040 Hb_010872_060 Hb_010872_060 Hb_000002_390--Hb_010872_060 Hb_001425_120 Hb_001425_120 Hb_000002_390--Hb_001425_120 Hb_012347_010 Hb_012347_010 Hb_000002_390--Hb_012347_010 Hb_000957_040 Hb_000957_040 Hb_000002_390--Hb_000957_040 Hb_001631_070 Hb_001631_070 Hb_000002_390--Hb_001631_070 Hb_000548_040--Hb_001425_120 Hb_002027_300 Hb_002027_300 Hb_000548_040--Hb_002027_300 Hb_000548_040--Hb_012347_010 Hb_000548_040--Hb_000957_040 Hb_000707_080 Hb_000707_080 Hb_000548_040--Hb_000707_080 Hb_010872_060--Hb_012347_010 Hb_010872_060--Hb_000957_040 Hb_001140_160 Hb_001140_160 Hb_010872_060--Hb_001140_160 Hb_010872_060--Hb_001631_070 Hb_124315_040 Hb_124315_040 Hb_010872_060--Hb_124315_040 Hb_012799_060 Hb_012799_060 Hb_010872_060--Hb_012799_060 Hb_002301_020 Hb_002301_020 Hb_001425_120--Hb_002301_020 Hb_004545_150 Hb_004545_150 Hb_001425_120--Hb_004545_150 Hb_000270_420 Hb_000270_420 Hb_001425_120--Hb_000270_420 Hb_007810_060 Hb_007810_060 Hb_001425_120--Hb_007810_060 Hb_000571_070 Hb_000571_070 Hb_001425_120--Hb_000571_070 Hb_012347_010--Hb_002027_300 Hb_012347_010--Hb_000957_040 Hb_012347_010--Hb_124315_040 Hb_012347_010--Hb_001140_160 Hb_000130_390 Hb_000130_390 Hb_012347_010--Hb_000130_390 Hb_000762_020 Hb_000762_020 Hb_000957_040--Hb_000762_020 Hb_000957_040--Hb_001140_160 Hb_000957_040--Hb_000130_390 Hb_000957_040--Hb_002027_300 Hb_001631_070--Hb_000957_040 Hb_001631_070--Hb_000762_020 Hb_001631_070--Hb_012347_010 Hb_001631_070--Hb_124315_040 Hb_003745_010 Hb_003745_010 Hb_001631_070--Hb_003745_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.4526 1.11885 0 0 3.8418 12.9783
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.2712 10.457 18.062 3.32359 0

CAGE analysis