Hb_000002_400

Information

Type transcription factor
Description TF Family: Orphans
Location Contig2: 579480-584430
Sequence    

Annotation

kegg
ID rcu:RCOM_0492540
description ethylene receptor, putative
nr
ID XP_012069790.1
description PREDICTED: ethylene receptor 2 [Jatropha curcas]
swissprot
ID Q0WPQ2
description Ethylene receptor 2 OS=Arabidopsis thaliana GN=ETR2 PE=1 SV=2
trembl
ID A0A067KZB8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02291 PE=4 SV=1
Gene Ontology
ID GO:0005789
description ethylene receptor 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20108: 580054-584287 , PASA_asmbl_20109: 579372-584287 , PASA_asmbl_20110: 581200-581950 , PASA_asmbl_20111: 581128-581553 , PASA_asmbl_20112: 583473-583676
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000002_400 0.0 transcription factor TF Family: Orphans PREDICTED: ethylene receptor 2 [Jatropha curcas]
2 Hb_005228_070 0.1139253302 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial [Jatropha curcas]
3 Hb_003938_190 0.1148784986 - - PREDICTED: pentatricopeptide repeat-containing protein At1g06145-like [Jatropha curcas]
4 Hb_000039_160 0.1283988937 - - PREDICTED: probable serine/threonine-protein kinase abkC [Jatropha curcas]
5 Hb_000019_120 0.1378302623 - - PREDICTED: rRNA-processing protein CGR1 [Jatropha curcas]
6 Hb_008566_050 0.1422049938 - - phosphoglycerate mutase, putative [Ricinus communis]
7 Hb_000117_090 0.1462962848 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
8 Hb_000011_400 0.1509711243 transcription factor TF Family: ERF ethylene-responsive transcription factor 4 [Hevea brasiliensis]
9 Hb_000549_040 0.1542268544 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like isoform X1 [Jatropha curcas]
10 Hb_002600_020 0.155565141 - - unnamed protein product [Vitis vinifera]
11 Hb_000063_140 0.1567862947 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Jatropha curcas]
12 Hb_000529_170 0.1572119712 - - hypothetical protein JCGZ_14691 [Jatropha curcas]
13 Hb_086639_010 0.1600157191 - - ubiquitin-protein ligase, putative [Ricinus communis]
14 Hb_011519_010 0.1616288601 - - PREDICTED: uncharacterized protein LOC105645310 [Jatropha curcas]
15 Hb_021576_110 0.1626569716 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]
16 Hb_000983_090 0.1636839354 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
17 Hb_001123_320 0.1638087365 - - PREDICTED: uncharacterized protein LOC105647314 isoform X3 [Jatropha curcas]
18 Hb_001437_150 0.1638305468 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
19 Hb_000856_380 0.1642355984 - - ubiquitin-conjugating enzyme [Medicago truncatula]
20 Hb_050622_050 0.1647721605 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]

Gene co-expression network

sample Hb_000002_400 Hb_000002_400 Hb_005228_070 Hb_005228_070 Hb_000002_400--Hb_005228_070 Hb_003938_190 Hb_003938_190 Hb_000002_400--Hb_003938_190 Hb_000039_160 Hb_000039_160 Hb_000002_400--Hb_000039_160 Hb_000019_120 Hb_000019_120 Hb_000002_400--Hb_000019_120 Hb_008566_050 Hb_008566_050 Hb_000002_400--Hb_008566_050 Hb_000117_090 Hb_000117_090 Hb_000002_400--Hb_000117_090 Hb_005228_070--Hb_003938_190 Hb_005228_070--Hb_000039_160 Hb_012325_020 Hb_012325_020 Hb_005228_070--Hb_012325_020 Hb_168319_030 Hb_168319_030 Hb_005228_070--Hb_168319_030 Hb_085863_030 Hb_085863_030 Hb_005228_070--Hb_085863_030 Hb_000063_140 Hb_000063_140 Hb_005228_070--Hb_000063_140 Hb_021576_110 Hb_021576_110 Hb_003938_190--Hb_021576_110 Hb_000676_010 Hb_000676_010 Hb_003938_190--Hb_000676_010 Hb_001085_060 Hb_001085_060 Hb_003938_190--Hb_001085_060 Hb_000140_230 Hb_000140_230 Hb_003938_190--Hb_000140_230 Hb_000039_160--Hb_008566_050 Hb_000039_160--Hb_000117_090 Hb_000529_170 Hb_000529_170 Hb_000039_160--Hb_000529_170 Hb_008725_260 Hb_008725_260 Hb_000039_160--Hb_008725_260 Hb_001245_100 Hb_001245_100 Hb_000039_160--Hb_001245_100 Hb_000155_200 Hb_000155_200 Hb_000039_160--Hb_000155_200 Hb_000019_120--Hb_085863_030 Hb_007317_200 Hb_007317_200 Hb_000019_120--Hb_007317_200 Hb_000019_120--Hb_000063_140 Hb_002878_020 Hb_002878_020 Hb_000019_120--Hb_002878_020 Hb_000056_240 Hb_000056_240 Hb_000019_120--Hb_000056_240 Hb_000086_400 Hb_000086_400 Hb_000019_120--Hb_000086_400 Hb_008566_050--Hb_000117_090 Hb_001437_150 Hb_001437_150 Hb_008566_050--Hb_001437_150 Hb_008566_050--Hb_000155_200 Hb_004705_080 Hb_004705_080 Hb_008566_050--Hb_004705_080 Hb_001123_130 Hb_001123_130 Hb_008566_050--Hb_001123_130 Hb_000366_090 Hb_000366_090 Hb_000117_090--Hb_000366_090 Hb_000117_090--Hb_168319_030 Hb_021409_030 Hb_021409_030 Hb_000117_090--Hb_021409_030 Hb_000563_250 Hb_000563_250 Hb_000117_090--Hb_000563_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.4801 23.1875 26.5803 10.8593 14.8854 17.0437
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.28016 38.0242 44.0586 19.435 6.24111

CAGE analysis