Hb_000002_440

Information

Type -
Description -
Location Contig2: 619100-631941
Sequence    

Annotation

kegg
ID pop:POPTR_0008s16320g
description POPTRDRAFT_832835; meprin and TRAF homology domain-containing family protein
nr
ID XP_012069783.1
description PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
swissprot
ID Q8RY18
description MATH domain-containing protein At5g43560 OS=Arabidopsis thaliana GN=At5g43560 PE=1 SV=1
trembl
ID A0A067KZB4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02286 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20116: 619290-631956 , PASA_asmbl_20117: 619934-631956 , PASA_asmbl_20118: 629974-630404
cDNA
(Sanger)
(ID:Location)		 004_C01.ab1: 619290-626094

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000002_440 0.0 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
2 Hb_025477_060 0.0702521012 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
3 Hb_000227_380 0.0719869869 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
4 Hb_000813_100 0.0720416733 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
5 Hb_000096_180 0.0720958721 - - PREDICTED: pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like isoform X1 [Jatropha curcas]
6 Hb_000594_020 0.0727966186 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X2 [Jatropha curcas]
7 Hb_002883_010 0.0742413626 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
8 Hb_004037_030 0.074490447 - - PREDICTED: DNA repair endonuclease UVH1 isoform X2 [Jatropha curcas]
9 Hb_007904_180 0.0791120606 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Jatropha curcas]
10 Hb_007849_020 0.0800290425 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
11 Hb_006816_300 0.0804827944 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
12 Hb_000046_450 0.0807747065 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
13 Hb_003866_020 0.0813461201 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006588_050 0.0830127759 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
15 Hb_001157_180 0.0843991361 - - protein binding protein, putative [Ricinus communis]
16 Hb_000821_010 0.0844777533 - - PREDICTED: auxin response factor 19-like [Jatropha curcas]
17 Hb_031754_010 0.0858663501 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
18 Hb_002235_320 0.0859979338 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
19 Hb_001975_020 0.0881584669 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
20 Hb_010080_060 0.0882265871 - - receptor protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000002_440 Hb_000002_440 Hb_025477_060 Hb_025477_060 Hb_000002_440--Hb_025477_060 Hb_000227_380 Hb_000227_380 Hb_000002_440--Hb_000227_380 Hb_000813_100 Hb_000813_100 Hb_000002_440--Hb_000813_100 Hb_000096_180 Hb_000096_180 Hb_000002_440--Hb_000096_180 Hb_000594_020 Hb_000594_020 Hb_000002_440--Hb_000594_020 Hb_002883_010 Hb_002883_010 Hb_000002_440--Hb_002883_010 Hb_147737_010 Hb_147737_010 Hb_025477_060--Hb_147737_010 Hb_025477_060--Hb_000096_180 Hb_000046_450 Hb_000046_450 Hb_025477_060--Hb_000046_450 Hb_046615_020 Hb_046615_020 Hb_025477_060--Hb_046615_020 Hb_001975_020 Hb_001975_020 Hb_025477_060--Hb_001975_020 Hb_003866_020 Hb_003866_020 Hb_000227_380--Hb_003866_020 Hb_007849_020 Hb_007849_020 Hb_000227_380--Hb_007849_020 Hb_175338_020 Hb_175338_020 Hb_000227_380--Hb_175338_020 Hb_000239_070 Hb_000239_070 Hb_000227_380--Hb_000239_070 Hb_001080_270 Hb_001080_270 Hb_000227_380--Hb_001080_270 Hb_000813_100--Hb_000594_020 Hb_000997_030 Hb_000997_030 Hb_000813_100--Hb_000997_030 Hb_004899_070 Hb_004899_070 Hb_000813_100--Hb_004899_070 Hb_000813_100--Hb_147737_010 Hb_001946_300 Hb_001946_300 Hb_000813_100--Hb_001946_300 Hb_027073_060 Hb_027073_060 Hb_000096_180--Hb_027073_060 Hb_002291_070 Hb_002291_070 Hb_000096_180--Hb_002291_070 Hb_002043_170 Hb_002043_170 Hb_000096_180--Hb_002043_170 Hb_001437_100 Hb_001437_100 Hb_000096_180--Hb_001437_100 Hb_000120_610 Hb_000120_610 Hb_000594_020--Hb_000120_610 Hb_002659_060 Hb_002659_060 Hb_000594_020--Hb_002659_060 Hb_000594_020--Hb_004899_070 Hb_002411_120 Hb_002411_120 Hb_000594_020--Hb_002411_120 Hb_004970_160 Hb_004970_160 Hb_000594_020--Hb_004970_160 Hb_002883_010--Hb_001437_100 Hb_002883_010--Hb_002043_170 Hb_000317_440 Hb_000317_440 Hb_002883_010--Hb_000317_440 Hb_031754_010 Hb_031754_010 Hb_002883_010--Hb_031754_010 Hb_002652_040 Hb_002652_040 Hb_002883_010--Hb_002652_040 Hb_002883_010--Hb_000239_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
97.0289 72.4098 19.3236 18.7112 101.674 121.05
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.5197 13.51 32.195 43.6446 24.1668

CAGE analysis