Hb_000002_480

Information

Type -
Description -
Location Contig2: 647524-652349
Sequence    

Annotation

kegg
ID rcu:RCOM_0908940
description hypothetical protein
nr
ID XP_012069780.1
description PREDICTED: protein WVD2-like 1 isoform X2 [Jatropha curcas]
swissprot
ID Q8GYX9
description Protein WVD2-like 1 OS=Arabidopsis thaliana GN=WDL1 PE=1 SV=1
trembl
ID A0A067L717
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02283 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20119: 647521-652343 , PASA_asmbl_20121: 648637-648926
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000002_480 0.0 - - PREDICTED: protein WVD2-like 1 isoform X2 [Jatropha curcas]
2 Hb_000331_370 0.0747892493 - - Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic [Gossypium arboreum]
3 Hb_086639_080 0.0801494652 - - conserved hypothetical protein [Ricinus communis]
4 Hb_012651_010 0.0851836222 - - PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
5 Hb_000890_230 0.0875865291 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
6 Hb_000139_530 0.0918381497 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000371_090 0.099606184 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit-like [Jatropha curcas]
8 Hb_004126_040 0.1014692258 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003209_130 0.1039522575 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
10 Hb_008406_180 0.104495379 - - RING/U-box superfamily protein isoform 2 [Theobroma cacao]
11 Hb_000256_230 0.1084335086 - - PREDICTED: uncharacterized protein LOC105637594 [Jatropha curcas]
12 Hb_005535_080 0.1092740853 - - hypothetical protein CICLE_v10012766mg [Citrus clementina]
13 Hb_011214_160 0.1096258945 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
14 Hb_003998_040 0.1129950501 - - organic anion transporter, putative [Ricinus communis]
15 Hb_001051_070 0.1132787219 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
16 Hb_007286_020 0.1155229782 - - hypothetical protein L484_010675 [Morus notabilis]
17 Hb_000028_600 0.1163719037 - - glutaredoxin-1, grx1, putative [Ricinus communis]
18 Hb_000622_110 0.1166536313 - - cmp-sialic acid transporter, putative [Ricinus communis]
19 Hb_000066_030 0.1173560652 - - PREDICTED: uncharacterized protein LOC105643898 isoform X2 [Jatropha curcas]
20 Hb_005977_100 0.1175861599 - - PREDICTED: tetraspanin-18 [Jatropha curcas]

Gene co-expression network

sample Hb_000002_480 Hb_000002_480 Hb_000331_370 Hb_000331_370 Hb_000002_480--Hb_000331_370 Hb_086639_080 Hb_086639_080 Hb_000002_480--Hb_086639_080 Hb_012651_010 Hb_012651_010 Hb_000002_480--Hb_012651_010 Hb_000890_230 Hb_000890_230 Hb_000002_480--Hb_000890_230 Hb_000139_530 Hb_000139_530 Hb_000002_480--Hb_000139_530 Hb_000371_090 Hb_000371_090 Hb_000002_480--Hb_000371_090 Hb_000107_080 Hb_000107_080 Hb_000331_370--Hb_000107_080 Hb_000331_370--Hb_086639_080 Hb_000331_370--Hb_000890_230 Hb_002660_150 Hb_002660_150 Hb_000331_370--Hb_002660_150 Hb_000028_600 Hb_000028_600 Hb_000331_370--Hb_000028_600 Hb_086639_080--Hb_000139_530 Hb_007286_020 Hb_007286_020 Hb_086639_080--Hb_007286_020 Hb_000622_110 Hb_000622_110 Hb_086639_080--Hb_000622_110 Hb_004102_170 Hb_004102_170 Hb_086639_080--Hb_004102_170 Hb_001946_180 Hb_001946_180 Hb_012651_010--Hb_001946_180 Hb_012651_010--Hb_000890_230 Hb_000429_050 Hb_000429_050 Hb_012651_010--Hb_000429_050 Hb_000140_350 Hb_000140_350 Hb_012651_010--Hb_000140_350 Hb_000984_310 Hb_000984_310 Hb_012651_010--Hb_000984_310 Hb_008406_180 Hb_008406_180 Hb_000890_230--Hb_008406_180 Hb_000890_230--Hb_086639_080 Hb_000890_230--Hb_000107_080 Hb_005797_010 Hb_005797_010 Hb_000139_530--Hb_005797_010 Hb_011214_160 Hb_011214_160 Hb_000139_530--Hb_011214_160 Hb_001087_030 Hb_001087_030 Hb_000139_530--Hb_001087_030 Hb_000009_400 Hb_000009_400 Hb_000139_530--Hb_000009_400 Hb_000139_530--Hb_004102_170 Hb_003998_040 Hb_003998_040 Hb_000371_090--Hb_003998_040 Hb_000184_070 Hb_000184_070 Hb_000371_090--Hb_000184_070 Hb_000371_090--Hb_011214_160 Hb_000261_210 Hb_000261_210 Hb_000371_090--Hb_000261_210 Hb_002351_030 Hb_002351_030 Hb_000371_090--Hb_002351_030 Hb_000066_030 Hb_000066_030 Hb_000371_090--Hb_000066_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.2352 16.893 31.4747 86.5623 24.982 20.4946
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.7876 13.0451 16.2774 21.1861 24.8546

CAGE analysis