Hb_000002_500

Information

Type -
Description -
Location Contig2: 665886-673603
Sequence    

Annotation

kegg
ID rcu:RCOM_0908960
description hypothetical protein
nr
ID XP_012069771.1
description PREDICTED: uncharacterized protein LOC105632094 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZB1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02281 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc knuckle family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20123: 665948-670083 , PASA_asmbl_20124: 665948-670054 , PASA_asmbl_20125: 670088-673233
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000002_500 0.0 - - PREDICTED: uncharacterized protein LOC105632094 isoform X1 [Jatropha curcas]
2 Hb_000046_120 0.0659498553 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
3 Hb_018591_020 0.0733437523 - - Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor, putative [Ricinus communis]
4 Hb_001115_070 0.074611542 - - RecName: Full=CASP-like protein 2C1; Short=PtCASPL2C1 [Populus trichocarpa]
5 Hb_002284_160 0.075181124 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
6 Hb_102179_010 0.0826333609 - - protein binding protein, putative [Ricinus communis]
7 Hb_003435_030 0.0872137394 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
8 Hb_008412_040 0.0881822523 - - unnamed protein product [Vitis vinifera]
9 Hb_001942_010 0.090127948 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
10 Hb_127629_010 0.0939043469 - - hypothetical protein CICLE_v10005216mg [Citrus clementina]
11 Hb_000815_090 0.0948617808 - - PREDICTED: uncharacterized protein LOC105630464 isoform X1 [Jatropha curcas]
12 Hb_001047_210 0.0964521207 - - PSI reaction center subunit II [Citrus sinensis]
13 Hb_002842_010 0.0969066884 - - sulfate transporter, putative [Ricinus communis]
14 Hb_002818_150 0.0971641701 transcription factor TF Family: MYB hypothetical protein POPTR_0014s10680g [Populus trichocarpa]
15 Hb_025557_060 0.0979822236 transcription factor TF Family: MYB Myb-related protein 306, putative isoform 1 [Theobroma cacao]
16 Hb_002007_220 0.0984170815 - - PREDICTED: signal recognition particle 43 kDa protein, chloroplastic [Jatropha curcas]
17 Hb_132840_170 0.0985749669 transcription factor TF Family: NAC Transcription factor [Theobroma cacao]
18 Hb_000608_290 0.099347773 - - thioredoxin f-type, putative [Ricinus communis]
19 Hb_004835_020 0.0993481604 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
20 Hb_002259_090 0.1001253031 - - PREDICTED: ABC transporter G family member 11 [Jatropha curcas]

Gene co-expression network

sample Hb_000002_500 Hb_000002_500 Hb_000046_120 Hb_000046_120 Hb_000002_500--Hb_000046_120 Hb_018591_020 Hb_018591_020 Hb_000002_500--Hb_018591_020 Hb_001115_070 Hb_001115_070 Hb_000002_500--Hb_001115_070 Hb_002284_160 Hb_002284_160 Hb_000002_500--Hb_002284_160 Hb_102179_010 Hb_102179_010 Hb_000002_500--Hb_102179_010 Hb_003435_030 Hb_003435_030 Hb_000002_500--Hb_003435_030 Hb_000046_120--Hb_003435_030 Hb_001942_010 Hb_001942_010 Hb_000046_120--Hb_001942_010 Hb_000046_120--Hb_018591_020 Hb_060253_010 Hb_060253_010 Hb_000046_120--Hb_060253_010 Hb_012395_090 Hb_012395_090 Hb_000046_120--Hb_012395_090 Hb_002007_220 Hb_002007_220 Hb_018591_020--Hb_002007_220 Hb_033363_040 Hb_033363_040 Hb_018591_020--Hb_033363_040 Hb_025557_060 Hb_025557_060 Hb_018591_020--Hb_025557_060 Hb_000608_290 Hb_000608_290 Hb_018591_020--Hb_000608_290 Hb_001115_070--Hb_002284_160 Hb_127629_010 Hb_127629_010 Hb_001115_070--Hb_127629_010 Hb_010136_010 Hb_010136_010 Hb_001115_070--Hb_010136_010 Hb_004017_030 Hb_004017_030 Hb_001115_070--Hb_004017_030 Hb_001115_070--Hb_018591_020 Hb_002284_160--Hb_004017_030 Hb_002284_160--Hb_010136_010 Hb_002284_160--Hb_127629_010 Hb_000815_090 Hb_000815_090 Hb_002284_160--Hb_000815_090 Hb_004835_020 Hb_004835_020 Hb_102179_010--Hb_004835_020 Hb_002246_030 Hb_002246_030 Hb_102179_010--Hb_002246_030 Hb_002182_010 Hb_002182_010 Hb_102179_010--Hb_002182_010 Hb_000500_240 Hb_000500_240 Hb_102179_010--Hb_000500_240 Hb_001047_210 Hb_001047_210 Hb_102179_010--Hb_001047_210 Hb_000520_040 Hb_000520_040 Hb_102179_010--Hb_000520_040 Hb_003435_030--Hb_060253_010 Hb_003435_030--Hb_010136_010 Hb_003435_030--Hb_001942_010 Hb_003435_030--Hb_018591_020 Hb_002702_010 Hb_002702_010 Hb_003435_030--Hb_002702_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.100654 5.89056 17.1769 15.2778 0.032492 0.0412481
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0579763 0.12167 0.102365 0.433521 25.5223

CAGE analysis