Hb_000003_050

Information

Type -
Description -
Location Contig3: 19794-23944
Sequence    

Annotation

kegg
ID tcc:TCM_035456
description Cysteine-rich RLK (RECEPTOR-like protein kinase) 8
nr
ID XP_007019411.1
description Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]
swissprot
ID P04146
description Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3
trembl
ID A0A061FHV9
description Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 OS=Theobroma cacao GN=TCM_035456 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31354: 21713-21850 , PASA_asmbl_31355: 22344-22599 , PASA_asmbl_31356: 24061-24585
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_050 0.0 - - Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]
2 Hb_000723_160 0.1239588276 transcription factor TF Family: TCP PREDICTED: transcription factor TCP11 [Jatropha curcas]
3 Hb_001969_090 0.1323226942 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
4 Hb_000317_280 0.141454886 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At5g08490 [Jatropha curcas]
5 Hb_000406_120 0.1448698462 - - acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
6 Hb_009510_040 0.1462213477 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
7 Hb_000503_050 0.1466730332 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Gossypium raimondii]
8 Hb_000836_080 0.1481314582 - - PREDICTED: pentatricopeptide repeat-containing protein At2g46050, mitochondrial [Jatropha curcas]
9 Hb_001619_080 0.1485690328 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001338_040 0.1528034267 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
11 Hb_007747_200 0.1546677302 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Jatropha curcas]
12 Hb_001021_130 0.1549642848 - - PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]
13 Hb_000574_350 0.1570272742 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
14 Hb_000419_060 0.158458278 - - PREDICTED: patatin-like protein 6 [Jatropha curcas]
15 Hb_000789_220 0.160887929 - - phosphofructokinase [Hevea brasiliensis]
16 Hb_002045_180 0.1629948548 - - PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]
17 Hb_003687_240 0.1633614383 - - PREDICTED: cryptochrome-1 [Jatropha curcas]
18 Hb_000343_130 0.1667968821 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
19 Hb_005147_090 0.1683761024 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X1 [Jatropha curcas]
20 Hb_010174_060 0.1685871592 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]

Gene co-expression network

sample Hb_000003_050 Hb_000003_050 Hb_000723_160 Hb_000723_160 Hb_000003_050--Hb_000723_160 Hb_001969_090 Hb_001969_090 Hb_000003_050--Hb_001969_090 Hb_000317_280 Hb_000317_280 Hb_000003_050--Hb_000317_280 Hb_000406_120 Hb_000406_120 Hb_000003_050--Hb_000406_120 Hb_009510_040 Hb_009510_040 Hb_000003_050--Hb_009510_040 Hb_000503_050 Hb_000503_050 Hb_000003_050--Hb_000503_050 Hb_000196_090 Hb_000196_090 Hb_000723_160--Hb_000196_090 Hb_001619_080 Hb_001619_080 Hb_000723_160--Hb_001619_080 Hb_006816_450 Hb_006816_450 Hb_000723_160--Hb_006816_450 Hb_000436_010 Hb_000436_010 Hb_000723_160--Hb_000436_010 Hb_001329_210 Hb_001329_210 Hb_000723_160--Hb_001329_210 Hb_007747_200 Hb_007747_200 Hb_001969_090--Hb_007747_200 Hb_001969_090--Hb_000317_280 Hb_000575_150 Hb_000575_150 Hb_001969_090--Hb_000575_150 Hb_003687_240 Hb_003687_240 Hb_001969_090--Hb_003687_240 Hb_010883_090 Hb_010883_090 Hb_001969_090--Hb_010883_090 Hb_000805_020 Hb_000805_020 Hb_001969_090--Hb_000805_020 Hb_000317_280--Hb_007747_200 Hb_000343_130 Hb_000343_130 Hb_000317_280--Hb_000343_130 Hb_001338_040 Hb_001338_040 Hb_000317_280--Hb_001338_040 Hb_000635_220 Hb_000635_220 Hb_000317_280--Hb_000635_220 Hb_006846_110 Hb_006846_110 Hb_000317_280--Hb_006846_110 Hb_000125_030 Hb_000125_030 Hb_000406_120--Hb_000125_030 Hb_000141_020 Hb_000141_020 Hb_000406_120--Hb_000141_020 Hb_002045_180 Hb_002045_180 Hb_000406_120--Hb_002045_180 Hb_006647_020 Hb_006647_020 Hb_000406_120--Hb_006647_020 Hb_010407_180 Hb_010407_180 Hb_000406_120--Hb_010407_180 Hb_002056_060 Hb_002056_060 Hb_000406_120--Hb_002056_060 Hb_165669_010 Hb_165669_010 Hb_009510_040--Hb_165669_010 Hb_000243_140 Hb_000243_140 Hb_009510_040--Hb_000243_140 Hb_009510_040--Hb_000503_050 Hb_002577_010 Hb_002577_010 Hb_009510_040--Hb_002577_010 Hb_000419_060 Hb_000419_060 Hb_009510_040--Hb_000419_060 Hb_002216_040 Hb_002216_040 Hb_000503_050--Hb_002216_040 Hb_005699_070 Hb_005699_070 Hb_000503_050--Hb_005699_070 Hb_014720_080 Hb_014720_080 Hb_000503_050--Hb_014720_080 Hb_000193_290 Hb_000193_290 Hb_000503_050--Hb_000193_290 Hb_000503_050--Hb_002056_060 Hb_000834_270 Hb_000834_270 Hb_000503_050--Hb_000834_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.231736 0.273911 0.0390319 0.0424225 0.0677825 0.178392
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.378648 0.286507 0.504189 0.222732 0.02445

CAGE analysis