Hb_000003_100

Information

Type transcription factor
Description TF Family: SNF2
Location Contig3: 58992-68855
Sequence    

Annotation

kegg
ID rcu:RCOM_1454140
description DNA repair helicase rad5,16, putative (EC:2.7.11.1)
nr
ID XP_012068574.1
description PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
swissprot
ID Q9FNI6
description Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1
trembl
ID A0A067KZQ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24472 PE=4 SV=1
Gene Ontology
ID GO:0003677
description uncharacterized atp-dependent helicase isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31365: 59107-60982 , PASA_asmbl_31366: 59827-59963 , PASA_asmbl_31367: 61002-68619 , PASA_asmbl_31368: 66605-67002 , PASA_asmbl_31369: 63616-67297 , PASA_asmbl_31370: 63732-64012
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_100 0.0 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
2 Hb_003216_090 0.0495378889 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]
3 Hb_000331_580 0.0503594872 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
4 Hb_002890_130 0.0536226944 - - tip120, putative [Ricinus communis]
5 Hb_005563_060 0.0569663576 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
6 Hb_012286_040 0.0580103665 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
7 Hb_000008_240 0.0591953989 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000037_220 0.0604281996 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
9 Hb_031527_030 0.0617177746 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
10 Hb_001377_350 0.0618323466 - - PREDICTED: exportin-2 [Jatropha curcas]
11 Hb_001628_070 0.0626512968 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
12 Hb_012092_060 0.0636427728 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
13 Hb_002007_110 0.0644082453 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
14 Hb_005568_040 0.0651118038 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
15 Hb_041327_010 0.0658301423 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
16 Hb_000537_050 0.0662632147 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
17 Hb_000317_100 0.0663326434 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
18 Hb_000665_230 0.0669452788 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
19 Hb_002411_110 0.0673674292 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
20 Hb_005215_010 0.0676700911 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000003_100 Hb_000003_100 Hb_003216_090 Hb_003216_090 Hb_000003_100--Hb_003216_090 Hb_000331_580 Hb_000331_580 Hb_000003_100--Hb_000331_580 Hb_002890_130 Hb_002890_130 Hb_000003_100--Hb_002890_130 Hb_005563_060 Hb_005563_060 Hb_000003_100--Hb_005563_060 Hb_012286_040 Hb_012286_040 Hb_000003_100--Hb_012286_040 Hb_000008_240 Hb_000008_240 Hb_000003_100--Hb_000008_240 Hb_001951_170 Hb_001951_170 Hb_003216_090--Hb_001951_170 Hb_003216_090--Hb_000331_580 Hb_000003_410 Hb_000003_410 Hb_003216_090--Hb_000003_410 Hb_000665_230 Hb_000665_230 Hb_003216_090--Hb_000665_230 Hb_001904_030 Hb_001904_030 Hb_003216_090--Hb_001904_030 Hb_000331_580--Hb_000008_240 Hb_005568_040 Hb_005568_040 Hb_000331_580--Hb_005568_040 Hb_002007_110 Hb_002007_110 Hb_000331_580--Hb_002007_110 Hb_123531_010 Hb_123531_010 Hb_000331_580--Hb_123531_010 Hb_006531_020 Hb_006531_020 Hb_000331_580--Hb_006531_020 Hb_011819_020 Hb_011819_020 Hb_002890_130--Hb_011819_020 Hb_002411_110 Hb_002411_110 Hb_002890_130--Hb_002411_110 Hb_000317_100 Hb_000317_100 Hb_002890_130--Hb_000317_100 Hb_005215_010 Hb_005215_010 Hb_002890_130--Hb_005215_010 Hb_000261_480 Hb_000261_480 Hb_002890_130--Hb_000261_480 Hb_000037_220 Hb_000037_220 Hb_005563_060--Hb_000037_220 Hb_001377_350 Hb_001377_350 Hb_005563_060--Hb_001377_350 Hb_005563_060--Hb_003216_090 Hb_005563_060--Hb_000665_230 Hb_012092_060 Hb_012092_060 Hb_005563_060--Hb_012092_060 Hb_031527_030 Hb_031527_030 Hb_012286_040--Hb_031527_030 Hb_002749_060 Hb_002749_060 Hb_012286_040--Hb_002749_060 Hb_041327_010 Hb_041327_010 Hb_012286_040--Hb_041327_010 Hb_012286_040--Hb_002890_130 Hb_012286_040--Hb_012092_060 Hb_004517_020 Hb_004517_020 Hb_000008_240--Hb_004517_020 Hb_002768_050 Hb_002768_050 Hb_000008_240--Hb_002768_050 Hb_000008_240--Hb_005568_040 Hb_000008_240--Hb_002007_110 Hb_000479_240 Hb_000479_240 Hb_000008_240--Hb_000479_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.18781 12.2644 7.43224 9.19626 7.11209 8.00831
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.11246 3.91134 7.04329 11.2987 10.4114

CAGE analysis