Hb_000003_140

Information

Type -
Description -
Location Contig3: 84343-84797
Sequence    

Annotation

kegg
ID mtr:MTR_8g012050
description GRF zinc finger containing protein
nr
ID KHN25171.1
description hypothetical protein glysoja_047034, partial [Glycine soja]
swissprot
ID -
description -
trembl
ID A0A0B2QU61
description Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_047034 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_140 0.0 - - hypothetical protein glysoja_047034, partial [Glycine soja]
2 Hb_167508_010 0.1904621876 - - hypothetical protein POPTR_0001s27330g [Populus trichocarpa]
3 Hb_003605_150 0.2294333006 - - chitinase family protein [Populus trichocarpa]
4 Hb_045481_010 0.2367378437 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
5 Hb_129459_010 0.2375698003 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
6 Hb_001269_510 0.2388788076 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
7 Hb_013016_010 0.2394868996 - - conserved hypothetical protein [Ricinus communis]
8 Hb_163508_010 0.2489860588 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
9 Hb_027472_130 0.2560727721 - - Cytochrome P450 [Theobroma cacao]
10 Hb_011161_030 0.2560776747 - - PREDICTED: uncharacterized protein LOC105638906 [Jatropha curcas]
11 Hb_000189_430 0.2566968897 - - unnamed protein product [Vitis vinifera]
12 Hb_002960_110 0.2601727741 - - PREDICTED: synaptotagmin-2 isoform X1 [Jatropha curcas]
13 Hb_001300_100 0.2655033438 - - -
14 Hb_003119_050 0.2736221644 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
15 Hb_004524_070 0.2762113706 - - PREDICTED: uncharacterized protein LOC105634656 [Jatropha curcas]
16 Hb_000189_390 0.2773138947 - - PREDICTED: pollen-specific protein SF21-like isoform X1 [Jatropha curcas]
17 Hb_003529_180 0.2791211998 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
18 Hb_005568_090 0.280700804 - - WD-repeat protein, putative [Ricinus communis]
19 Hb_002450_140 0.2838965017 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
20 Hb_000653_020 0.2903213582 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Jatropha curcas]

Gene co-expression network

sample Hb_000003_140 Hb_000003_140 Hb_167508_010 Hb_167508_010 Hb_000003_140--Hb_167508_010 Hb_003605_150 Hb_003605_150 Hb_000003_140--Hb_003605_150 Hb_045481_010 Hb_045481_010 Hb_000003_140--Hb_045481_010 Hb_129459_010 Hb_129459_010 Hb_000003_140--Hb_129459_010 Hb_001269_510 Hb_001269_510 Hb_000003_140--Hb_001269_510 Hb_013016_010 Hb_013016_010 Hb_000003_140--Hb_013016_010 Hb_061466_020 Hb_061466_020 Hb_167508_010--Hb_061466_020 Hb_001214_170 Hb_001214_170 Hb_167508_010--Hb_001214_170 Hb_167508_010--Hb_129459_010 Hb_099990_030 Hb_099990_030 Hb_167508_010--Hb_099990_030 Hb_000189_430 Hb_000189_430 Hb_167508_010--Hb_000189_430 Hb_000185_230 Hb_000185_230 Hb_003605_150--Hb_000185_230 Hb_002960_110 Hb_002960_110 Hb_003605_150--Hb_002960_110 Hb_003529_180 Hb_003529_180 Hb_003605_150--Hb_003529_180 Hb_003119_050 Hb_003119_050 Hb_003605_150--Hb_003119_050 Hb_002304_010 Hb_002304_010 Hb_003605_150--Hb_002304_010 Hb_059301_010 Hb_059301_010 Hb_045481_010--Hb_059301_010 Hb_001138_030 Hb_001138_030 Hb_045481_010--Hb_001138_030 Hb_045481_010--Hb_129459_010 Hb_000816_010 Hb_000816_010 Hb_045481_010--Hb_000816_010 Hb_045481_010--Hb_167508_010 Hb_129459_010--Hb_001138_030 Hb_011161_030 Hb_011161_030 Hb_129459_010--Hb_011161_030 Hb_129459_010--Hb_061466_020 Hb_129459_010--Hb_000189_430 Hb_160233_020 Hb_160233_020 Hb_129459_010--Hb_160233_020 Hb_002450_140 Hb_002450_140 Hb_001269_510--Hb_002450_140 Hb_000424_070 Hb_000424_070 Hb_001269_510--Hb_000424_070 Hb_001776_200 Hb_001776_200 Hb_001269_510--Hb_001776_200 Hb_000058_050 Hb_000058_050 Hb_001269_510--Hb_000058_050 Hb_000313_290 Hb_000313_290 Hb_001269_510--Hb_000313_290 Hb_003026_030 Hb_003026_030 Hb_001269_510--Hb_003026_030 Hb_124951_010 Hb_124951_010 Hb_013016_010--Hb_124951_010 Hb_074792_010 Hb_074792_010 Hb_013016_010--Hb_074792_010 Hb_000317_190 Hb_000317_190 Hb_013016_010--Hb_000317_190 Hb_000653_020 Hb_000653_020 Hb_013016_010--Hb_000653_020 Hb_002600_130 Hb_002600_130 Hb_013016_010--Hb_002600_130 Hb_000189_390 Hb_000189_390 Hb_013016_010--Hb_000189_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.5105 2.7927 8.59365 0.480991 3.13704 0.475904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.386914 0 0.170058 0.326837

CAGE analysis