Hb_000003_150

Information

Type -
Description -
Location Contig3: 85851-95410
Sequence    

Annotation

kegg
ID rcu:RCOM_1454120
description protein arginine n-methyltransferase, putative (EC:2.1.1.125)
nr
ID XP_012068576.1
description PREDICTED: probable protein arginine N-methyltransferase 6 [Jatropha curcas]
swissprot
ID Q08A71
description Probable protein arginine N-methyltransferase 6 OS=Arabidopsis thaliana GN=PRMT6 PE=2 SV=1
trembl
ID A0A067L7J2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24474 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_150 0.0 - - PREDICTED: probable protein arginine N-methyltransferase 6 [Jatropha curcas]
2 Hb_000169_190 0.1693800813 desease resistance Gene Name: AAA_17 PREDICTED: protein SMG9-like [Jatropha curcas]
3 Hb_012184_050 0.1824247801 - - hypothetical protein POPTR_0008s01610g [Populus trichocarpa]
4 Hb_007083_010 0.1893537295 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 13-like, partial [Nelumbo nucifera]
5 Hb_000152_670 0.1913232062 - - hypothetical protein VITISV_037603 [Vitis vinifera]
6 Hb_009693_030 0.1946333664 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_114984_010 0.1969120738 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000996_180 0.1971016822 - - PREDICTED: tetraspanin-10 [Jatropha curcas]
9 Hb_007594_100 0.1984995282 transcription factor TF Family: MIKC mads box protein, putative [Ricinus communis]
10 Hb_004017_040 0.1995490204 - - kinetochore protein nuf2, putative [Ricinus communis]
11 Hb_000258_320 0.1997758444 - - -
12 Hb_188996_010 0.2011084776 - - conserved hypothetical protein [Ricinus communis]
13 Hb_036227_010 0.2031532802 - - -
14 Hb_005155_020 0.2045588734 - - -
15 Hb_035318_010 0.2048501329 - - PREDICTED: uncharacterized protein LOC105645250 [Jatropha curcas]
16 Hb_000504_170 0.2061847951 - - hypothetical protein B456_006G033900 [Gossypium raimondii]
17 Hb_128376_010 0.2089513876 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_003388_050 0.2091648346 - - -
19 Hb_000365_160 0.2098352009 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Jatropha curcas]
20 Hb_000186_260 0.2100515319 transcription factor TF Family: PHD PREDICTED: protein polybromo-1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000003_150 Hb_000003_150 Hb_000169_190 Hb_000169_190 Hb_000003_150--Hb_000169_190 Hb_012184_050 Hb_012184_050 Hb_000003_150--Hb_012184_050 Hb_007083_010 Hb_007083_010 Hb_000003_150--Hb_007083_010 Hb_000152_670 Hb_000152_670 Hb_000003_150--Hb_000152_670 Hb_009693_030 Hb_009693_030 Hb_000003_150--Hb_009693_030 Hb_114984_010 Hb_114984_010 Hb_000003_150--Hb_114984_010 Hb_000169_190--Hb_012184_050 Hb_027472_210 Hb_027472_210 Hb_000169_190--Hb_027472_210 Hb_188996_010 Hb_188996_010 Hb_000169_190--Hb_188996_010 Hb_007123_070 Hb_007123_070 Hb_000169_190--Hb_007123_070 Hb_027402_090 Hb_027402_090 Hb_000169_190--Hb_027402_090 Hb_058551_010 Hb_058551_010 Hb_000169_190--Hb_058551_010 Hb_002805_170 Hb_002805_170 Hb_012184_050--Hb_002805_170 Hb_000045_320 Hb_000045_320 Hb_012184_050--Hb_000045_320 Hb_121729_020 Hb_121729_020 Hb_012184_050--Hb_121729_020 Hb_007951_100 Hb_007951_100 Hb_012184_050--Hb_007951_100 Hb_005695_060 Hb_005695_060 Hb_012184_050--Hb_005695_060 Hb_014720_170 Hb_014720_170 Hb_007083_010--Hb_014720_170 Hb_007083_010--Hb_027472_210 Hb_000504_170 Hb_000504_170 Hb_007083_010--Hb_000504_170 Hb_002043_090 Hb_002043_090 Hb_007083_010--Hb_002043_090 Hb_002026_140 Hb_002026_140 Hb_007083_010--Hb_002026_140 Hb_001427_050 Hb_001427_050 Hb_007083_010--Hb_001427_050 Hb_001052_040 Hb_001052_040 Hb_000152_670--Hb_001052_040 Hb_128376_010 Hb_128376_010 Hb_000152_670--Hb_128376_010 Hb_000996_180 Hb_000996_180 Hb_000152_670--Hb_000996_180 Hb_004017_040 Hb_004017_040 Hb_000152_670--Hb_004017_040 Hb_015354_010 Hb_015354_010 Hb_000152_670--Hb_015354_010 Hb_009646_050 Hb_009646_050 Hb_000152_670--Hb_009646_050 Hb_009693_030--Hb_000996_180 Hb_003177_010 Hb_003177_010 Hb_009693_030--Hb_003177_010 Hb_089889_020 Hb_089889_020 Hb_009693_030--Hb_089889_020 Hb_001910_020 Hb_001910_020 Hb_009693_030--Hb_001910_020 Hb_107847_010 Hb_107847_010 Hb_009693_030--Hb_107847_010 Hb_073973_160 Hb_073973_160 Hb_009693_030--Hb_073973_160 Hb_004920_060 Hb_004920_060 Hb_114984_010--Hb_004920_060 Hb_001731_020 Hb_001731_020 Hb_114984_010--Hb_001731_020 Hb_000997_410 Hb_000997_410 Hb_114984_010--Hb_000997_410 Hb_001489_070 Hb_001489_070 Hb_114984_010--Hb_001489_070 Hb_000116_460 Hb_000116_460 Hb_114984_010--Hb_000116_460 Hb_000021_020 Hb_000021_020 Hb_114984_010--Hb_000021_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.33074 0.631193 0.952842 0.485722 1.14547 0.795209
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.402249 0.21086 0 0.426667 0

CAGE analysis