Hb_000003_160

Information

Type -
Description -
Location Contig3: 96118-101549
Sequence    

Annotation

kegg
ID rcu:RCOM_1454110
description mitochondrial import receptor subunit tom40, putative
nr
ID XP_012068577.1
description PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
swissprot
ID Q9LHE5
description Mitochondrial import receptor subunit TOM40-1 OS=Arabidopsis thaliana GN=TOM40-1 PE=1 SV=3
trembl
ID A0A067KW88
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24475 PE=4 SV=1
Gene Ontology
ID GO:0005741
description mitochondrial import receptor subunit tom40-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31375: 96236-97268 , PASA_asmbl_31376: 98093-98385 , PASA_asmbl_31377: 99062-99348 , PASA_asmbl_31379: 100307-101341
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_160 0.0 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
2 Hb_027295_010 0.0729986774 - - 40S ribosomal protein S7, putative [Ricinus communis]
3 Hb_003615_010 0.0773273216 - - 60S ribosomal protein L8, putative [Ricinus communis]
4 Hb_000640_240 0.0790048975 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
5 Hb_010691_060 0.0796044093 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
6 Hb_000041_270 0.0830215567 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
7 Hb_003058_130 0.0846517584 - - PREDICTED: protein N-lysine methyltransferase METTL21A isoform X1 [Jatropha curcas]
8 Hb_003126_050 0.086606182 - - PREDICTED: cell cycle checkpoint protein RAD17 isoform X1 [Jatropha curcas]
9 Hb_001358_030 0.0869557165 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
10 Hb_002043_190 0.0889087394 - - rwd domain-containing protein, putative [Ricinus communis]
11 Hb_004800_230 0.0892909385 - - PREDICTED: MIP18 family protein At1g68310 [Jatropha curcas]
12 Hb_000099_240 0.0893255547 - - 60S ribosomal protein L7a, putative [Ricinus communis]
13 Hb_039946_020 0.0898976556 - - conserved hypothetical protein [Ricinus communis]
14 Hb_009557_070 0.0909312838 - - conserved hypothetical protein [Ricinus communis]
15 Hb_042083_050 0.091095422 - - 60S ribosomal protein L11, putative [Ricinus communis]
16 Hb_000205_160 0.0918323766 - - Peroxisome biogenesis protein 12 [Morus notabilis]
17 Hb_000321_070 0.0943754551 - - protein with unknown function [Ricinus communis]
18 Hb_000291_220 0.0954022965 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105638855 [Jatropha curcas]
19 Hb_004223_090 0.0959279571 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FC isoform X2 [Jatropha curcas]
20 Hb_003766_040 0.0960858113 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000003_160 Hb_000003_160 Hb_027295_010 Hb_027295_010 Hb_000003_160--Hb_027295_010 Hb_003615_010 Hb_003615_010 Hb_000003_160--Hb_003615_010 Hb_000640_240 Hb_000640_240 Hb_000003_160--Hb_000640_240 Hb_010691_060 Hb_010691_060 Hb_000003_160--Hb_010691_060 Hb_000041_270 Hb_000041_270 Hb_000003_160--Hb_000041_270 Hb_003058_130 Hb_003058_130 Hb_000003_160--Hb_003058_130 Hb_042083_050 Hb_042083_050 Hb_027295_010--Hb_042083_050 Hb_001358_030 Hb_001358_030 Hb_027295_010--Hb_001358_030 Hb_001369_660 Hb_001369_660 Hb_027295_010--Hb_001369_660 Hb_012389_020 Hb_012389_020 Hb_027295_010--Hb_012389_020 Hb_000099_240 Hb_000099_240 Hb_027295_010--Hb_000099_240 Hb_001048_020 Hb_001048_020 Hb_003615_010--Hb_001048_020 Hb_061090_010 Hb_061090_010 Hb_003615_010--Hb_061090_010 Hb_001226_160 Hb_001226_160 Hb_003615_010--Hb_001226_160 Hb_172632_090 Hb_172632_090 Hb_003615_010--Hb_172632_090 Hb_000613_140 Hb_000613_140 Hb_003615_010--Hb_000613_140 Hb_000926_250 Hb_000926_250 Hb_003615_010--Hb_000926_250 Hb_000640_240--Hb_001358_030 Hb_003126_050 Hb_003126_050 Hb_000640_240--Hb_003126_050 Hb_066182_010 Hb_066182_010 Hb_000640_240--Hb_066182_010 Hb_096563_010 Hb_096563_010 Hb_000640_240--Hb_096563_010 Hb_011970_030 Hb_011970_030 Hb_000640_240--Hb_011970_030 Hb_003417_020 Hb_003417_020 Hb_000640_240--Hb_003417_020 Hb_001766_150 Hb_001766_150 Hb_010691_060--Hb_001766_150 Hb_000157_030 Hb_000157_030 Hb_010691_060--Hb_000157_030 Hb_003266_050 Hb_003266_050 Hb_010691_060--Hb_003266_050 Hb_185830_020 Hb_185830_020 Hb_010691_060--Hb_185830_020 Hb_002391_300 Hb_002391_300 Hb_010691_060--Hb_002391_300 Hb_010691_060--Hb_003058_130 Hb_000210_180 Hb_000210_180 Hb_000041_270--Hb_000210_180 Hb_000041_270--Hb_096563_010 Hb_000041_270--Hb_003126_050 Hb_000757_060 Hb_000757_060 Hb_000041_270--Hb_000757_060 Hb_001481_090 Hb_001481_090 Hb_000041_270--Hb_001481_090 Hb_004491_010 Hb_004491_010 Hb_000041_270--Hb_004491_010 Hb_003392_040 Hb_003392_040 Hb_003058_130--Hb_003392_040 Hb_011689_080 Hb_011689_080 Hb_003058_130--Hb_011689_080 Hb_033843_010 Hb_033843_010 Hb_003058_130--Hb_033843_010 Hb_000103_560 Hb_000103_560 Hb_003058_130--Hb_000103_560 Hb_002078_150 Hb_002078_150 Hb_003058_130--Hb_002078_150 Hb_039837_010 Hb_039837_010 Hb_003058_130--Hb_039837_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.5253 11.2404 13.5262 13.8523 20.3393 36.1219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.9848 32.0118 17.0105 24.6199 5.47416

CAGE analysis