Hb_000003_210

Information

Type -
Description -
Location Contig3: 124271-125564
Sequence    

Annotation

kegg
ID rcu:RCOM_1454040
description hypothetical protein
nr
ID XP_012068585.1
description PREDICTED: GEM-like protein 4 [Jatropha curcas]
swissprot
ID Q9FTA0
description GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1
trembl
ID A0A067L7J7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24479 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31385: 124986-125455
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_210 0.0 - - PREDICTED: GEM-like protein 4 [Jatropha curcas]
2 Hb_132840_150 0.1364794613 - - RNA-binding region-containing protein, putative [Ricinus communis]
3 Hb_003583_010 0.1407437051 - - PREDICTED: patatin-like protein 6 [Jatropha curcas]
4 Hb_005253_020 0.1433803637 - - PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]
5 Hb_000190_170 0.1445887091 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
6 Hb_001159_230 0.1449047667 - - Kinesin heavy chain, putative [Ricinus communis]
7 Hb_007811_020 0.1456743577 - - PREDICTED: expansin-A6 [Jatropha curcas]
8 Hb_006002_050 0.1471190356 - - PREDICTED: uncharacterized protein LOC105638083 [Jatropha curcas]
9 Hb_000061_400 0.1479071685 - - dimethylaniline monooxygenase, putative [Ricinus communis]
10 Hb_000120_940 0.152868129 - - PREDICTED: phosphoserine aminotransferase 1, chloroplastic-like [Jatropha curcas]
11 Hb_005730_060 0.1535736995 - - PREDICTED: inorganic pyrophosphatase 1-like [Jatropha curcas]
12 Hb_001287_090 0.1538013513 - - Endoglucanase 4 [Aegilops tauschii]
13 Hb_000297_140 0.1539970235 - - hypothetical protein RCOM_0293450 [Ricinus communis]
14 Hb_000820_110 0.1558571074 - - UDP-XYL synthase 6 isoform 1 [Theobroma cacao]
15 Hb_041692_010 0.155921678 - - annexin [Manihot esculenta]
16 Hb_004117_090 0.1572586721 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 70 [Jatropha curcas]
17 Hb_004435_020 0.1581600651 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
18 Hb_000959_320 0.1585481824 - - PREDICTED: uncharacterized protein LOC105778325 [Gossypium raimondii]
19 Hb_000748_120 0.1587830425 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL1 [Jatropha curcas]
20 Hb_064546_010 0.1598104779 - - PREDICTED: peroxidase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000003_210 Hb_000003_210 Hb_132840_150 Hb_132840_150 Hb_000003_210--Hb_132840_150 Hb_003583_010 Hb_003583_010 Hb_000003_210--Hb_003583_010 Hb_005253_020 Hb_005253_020 Hb_000003_210--Hb_005253_020 Hb_000190_170 Hb_000190_170 Hb_000003_210--Hb_000190_170 Hb_001159_230 Hb_001159_230 Hb_000003_210--Hb_001159_230 Hb_007811_020 Hb_007811_020 Hb_000003_210--Hb_007811_020 Hb_004117_090 Hb_004117_090 Hb_132840_150--Hb_004117_090 Hb_001105_120 Hb_001105_120 Hb_132840_150--Hb_001105_120 Hb_012518_080 Hb_012518_080 Hb_132840_150--Hb_012518_080 Hb_132840_150--Hb_000190_170 Hb_039222_010 Hb_039222_010 Hb_132840_150--Hb_039222_010 Hb_000959_320 Hb_000959_320 Hb_003583_010--Hb_000959_320 Hb_000130_460 Hb_000130_460 Hb_003583_010--Hb_000130_460 Hb_003583_010--Hb_000190_170 Hb_000140_320 Hb_000140_320 Hb_003583_010--Hb_000140_320 Hb_007625_010 Hb_007625_010 Hb_003583_010--Hb_007625_010 Hb_000003_110 Hb_000003_110 Hb_005253_020--Hb_000003_110 Hb_002292_080 Hb_002292_080 Hb_005253_020--Hb_002292_080 Hb_005253_020--Hb_012518_080 Hb_000017_250 Hb_000017_250 Hb_005253_020--Hb_000017_250 Hb_000735_020 Hb_000735_020 Hb_005253_020--Hb_000735_020 Hb_002411_090 Hb_002411_090 Hb_000190_170--Hb_002411_090 Hb_000190_170--Hb_039222_010 Hb_001544_090 Hb_001544_090 Hb_000190_170--Hb_001544_090 Hb_000190_170--Hb_007811_020 Hb_000190_170--Hb_004117_090 Hb_001095_020 Hb_001095_020 Hb_000190_170--Hb_001095_020 Hb_000878_050 Hb_000878_050 Hb_001159_230--Hb_000878_050 Hb_006002_050 Hb_006002_050 Hb_001159_230--Hb_006002_050 Hb_001159_230--Hb_001095_020 Hb_004696_010 Hb_004696_010 Hb_001159_230--Hb_004696_010 Hb_004435_020 Hb_004435_020 Hb_001159_230--Hb_004435_020 Hb_005976_110 Hb_005976_110 Hb_001159_230--Hb_005976_110 Hb_007811_020--Hb_004435_020 Hb_007811_020--Hb_001544_090 Hb_007218_040 Hb_007218_040 Hb_007811_020--Hb_007218_040 Hb_007811_020--Hb_000878_050 Hb_000392_110 Hb_000392_110 Hb_007811_020--Hb_000392_110 Hb_001541_130 Hb_001541_130 Hb_007811_020--Hb_001541_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0711277 0.0584206 3.2777 5.61932 0.0410237 0.0192745
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.150343 0.275906 0.217775 0.522958 2.7433

CAGE analysis