Hb_000003_220

Information

Type -
Description -
Location Contig3: 126642-128476
Sequence    

Annotation

kegg
ID rcu:RCOM_1454030
description glucose regulated repressor protein, putative
nr
ID XP_012068588.1
description PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KW94
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31387: 126643-128417
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_220 0.0 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
2 Hb_004143_040 0.1062902876 - - argininosuccinate lyase, putative [Ricinus communis]
3 Hb_001864_060 0.1100989466 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
4 Hb_000574_540 0.1104809619 - - ATP binding protein, putative [Ricinus communis]
5 Hb_008511_090 0.1113318961 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
6 Hb_004355_020 0.112620837 - - PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Jatropha curcas]
7 Hb_000000_270 0.1130021611 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
8 Hb_014497_050 0.1135174297 transcription factor TF Family: bZIP hypothetical protein JCGZ_08021 [Jatropha curcas]
9 Hb_002255_030 0.1192972813 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
10 Hb_000523_040 0.1194073201 - - PREDICTED: auxin response factor 8 isoform X1 [Jatropha curcas]
11 Hb_004785_060 0.1200124089 - - PREDICTED: SKP1-interacting partner 15 [Jatropha curcas]
12 Hb_000441_150 0.121653388 - - PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_010417_080 0.122357944 - - PREDICTED: uncharacterized protein LOC105645742 isoform X1 [Jatropha curcas]
14 Hb_003761_010 0.1250053982 - - alcohol dehydrogenase, putative [Ricinus communis]
15 Hb_000859_060 0.1251154342 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]
16 Hb_001541_230 0.1252775585 - - unnamed protein product [Vitis vinifera]
17 Hb_002078_220 0.1257612131 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
18 Hb_000649_110 0.1258684105 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
19 Hb_028962_020 0.1262520779 - - hypothetical protein POPTR_0016s00660g [Populus trichocarpa]
20 Hb_001936_020 0.1267525089 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000003_220 Hb_000003_220 Hb_004143_040 Hb_004143_040 Hb_000003_220--Hb_004143_040 Hb_001864_060 Hb_001864_060 Hb_000003_220--Hb_001864_060 Hb_000574_540 Hb_000574_540 Hb_000003_220--Hb_000574_540 Hb_008511_090 Hb_008511_090 Hb_000003_220--Hb_008511_090 Hb_004355_020 Hb_004355_020 Hb_000003_220--Hb_004355_020 Hb_000000_270 Hb_000000_270 Hb_000003_220--Hb_000000_270 Hb_000023_280 Hb_000023_280 Hb_004143_040--Hb_000023_280 Hb_000116_410 Hb_000116_410 Hb_004143_040--Hb_000116_410 Hb_003373_030 Hb_003373_030 Hb_004143_040--Hb_003373_030 Hb_002662_020 Hb_002662_020 Hb_004143_040--Hb_002662_020 Hb_003761_010 Hb_003761_010 Hb_004143_040--Hb_003761_010 Hb_001205_240 Hb_001205_240 Hb_004143_040--Hb_001205_240 Hb_004109_030 Hb_004109_030 Hb_001864_060--Hb_004109_030 Hb_001864_060--Hb_008511_090 Hb_003752_100 Hb_003752_100 Hb_001864_060--Hb_003752_100 Hb_116086_010 Hb_116086_010 Hb_001864_060--Hb_116086_010 Hb_001828_130 Hb_001828_130 Hb_001864_060--Hb_001828_130 Hb_000025_330 Hb_000025_330 Hb_001864_060--Hb_000025_330 Hb_000092_020 Hb_000092_020 Hb_000574_540--Hb_000092_020 Hb_001638_270 Hb_001638_270 Hb_000574_540--Hb_001638_270 Hb_000003_190 Hb_000003_190 Hb_000574_540--Hb_000003_190 Hb_000366_120 Hb_000366_120 Hb_000574_540--Hb_000366_120 Hb_002872_040 Hb_002872_040 Hb_000574_540--Hb_002872_040 Hb_001080_230 Hb_001080_230 Hb_000574_540--Hb_001080_230 Hb_000070_080 Hb_000070_080 Hb_008511_090--Hb_000070_080 Hb_008511_090--Hb_004109_030 Hb_001005_190 Hb_001005_190 Hb_008511_090--Hb_001005_190 Hb_007163_120 Hb_007163_120 Hb_008511_090--Hb_007163_120 Hb_000479_220 Hb_000479_220 Hb_008511_090--Hb_000479_220 Hb_002078_220 Hb_002078_220 Hb_008511_090--Hb_002078_220 Hb_007254_070 Hb_007254_070 Hb_004355_020--Hb_007254_070 Hb_011671_430 Hb_011671_430 Hb_004355_020--Hb_011671_430 Hb_001021_170 Hb_001021_170 Hb_004355_020--Hb_001021_170 Hb_000629_010 Hb_000629_010 Hb_004355_020--Hb_000629_010 Hb_011218_040 Hb_011218_040 Hb_004355_020--Hb_011218_040 Hb_006788_020 Hb_006788_020 Hb_004355_020--Hb_006788_020 Hb_000000_270--Hb_000366_120 Hb_000982_060 Hb_000982_060 Hb_000000_270--Hb_000982_060 Hb_000562_090 Hb_000562_090 Hb_000000_270--Hb_000562_090 Hb_001541_230 Hb_001541_230 Hb_000000_270--Hb_001541_230 Hb_028962_020 Hb_028962_020 Hb_000000_270--Hb_028962_020 Hb_000886_050 Hb_000886_050 Hb_000000_270--Hb_000886_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.0177 51.7232 15.859 27.5188 21.7979 35.9371
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.486 18.7324 24.9689 29.0524 9.06865

CAGE analysis