Hb_000003_230

Information

Type -
Description -
Location Contig3: 130809-133234
Sequence    

Annotation

kegg
ID cic:CICLE_v10031833mg
description hypothetical protein
nr
ID XP_012068587.1
description PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
swissprot
ID Q8VZR0
description FAD synthetase 2, chloroplastic OS=Arabidopsis thaliana GN=RIBF2 PE=1 SV=1
trembl
ID V4TM29
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031833mg PE=4 SV=1
Gene Ontology
ID GO:0009507
description fad synthetase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31388: 130790-133162
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_230 0.0 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
2 Hb_007676_080 0.0388584244 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
3 Hb_003304_020 0.0421629835 - - Polyadenylate-binding protein RBP47C [Glycine soja]
4 Hb_003582_060 0.0434353464 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
5 Hb_006573_190 0.0577572943 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
6 Hb_006615_240 0.0610507181 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
7 Hb_004058_030 0.0612416992 - - PREDICTED: stomatin-like protein 2, mitochondrial [Jatropha curcas]
8 Hb_000288_030 0.0653830256 - - PREDICTED: syntaxin-32 [Jatropha curcas]
9 Hb_004934_100 0.0654996435 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004586_420 0.0658575178 - - PREDICTED: uncharacterized protein LOC105630659 [Jatropha curcas]
11 Hb_000340_180 0.0664111534 - - PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 [Jatropha curcas]
12 Hb_000827_050 0.0667910975 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
13 Hb_001489_080 0.067467299 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
14 Hb_000390_300 0.0684546835 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
15 Hb_002169_040 0.0692116252 - - unknown [Populus trichocarpa]
16 Hb_000599_250 0.0697392908 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
17 Hb_000460_030 0.0699370851 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
18 Hb_000928_070 0.0706311505 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
19 Hb_008841_020 0.0712213173 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631075 isoform X1 [Jatropha curcas]
20 Hb_001828_150 0.0725148719 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000003_230 Hb_000003_230 Hb_007676_080 Hb_007676_080 Hb_000003_230--Hb_007676_080 Hb_003304_020 Hb_003304_020 Hb_000003_230--Hb_003304_020 Hb_003582_060 Hb_003582_060 Hb_000003_230--Hb_003582_060 Hb_006573_190 Hb_006573_190 Hb_000003_230--Hb_006573_190 Hb_006615_240 Hb_006615_240 Hb_000003_230--Hb_006615_240 Hb_004058_030 Hb_004058_030 Hb_000003_230--Hb_004058_030 Hb_007676_080--Hb_003304_020 Hb_002169_040 Hb_002169_040 Hb_007676_080--Hb_002169_040 Hb_000390_300 Hb_000390_300 Hb_007676_080--Hb_000390_300 Hb_008494_100 Hb_008494_100 Hb_007676_080--Hb_008494_100 Hb_007676_080--Hb_006573_190 Hb_003304_020--Hb_004058_030 Hb_003304_020--Hb_003582_060 Hb_003052_190 Hb_003052_190 Hb_003304_020--Hb_003052_190 Hb_002681_100 Hb_002681_100 Hb_003304_020--Hb_002681_100 Hb_003582_060--Hb_006615_240 Hb_000221_190 Hb_000221_190 Hb_003582_060--Hb_000221_190 Hb_017895_040 Hb_017895_040 Hb_003582_060--Hb_017895_040 Hb_001300_150 Hb_001300_150 Hb_003582_060--Hb_001300_150 Hb_000566_120 Hb_000566_120 Hb_006573_190--Hb_000566_120 Hb_004586_420 Hb_004586_420 Hb_006573_190--Hb_004586_420 Hb_006573_190--Hb_003582_060 Hb_001828_150 Hb_001828_150 Hb_006573_190--Hb_001828_150 Hb_006573_190--Hb_000390_300 Hb_010098_050 Hb_010098_050 Hb_006615_240--Hb_010098_050 Hb_006615_240--Hb_000390_300 Hb_004109_170 Hb_004109_170 Hb_006615_240--Hb_004109_170 Hb_001341_150 Hb_001341_150 Hb_006615_240--Hb_001341_150 Hb_004058_030--Hb_002681_100 Hb_004058_030--Hb_006615_240 Hb_004058_030--Hb_003582_060 Hb_000684_380 Hb_000684_380 Hb_004058_030--Hb_000684_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.11546 6.66318 11.3362 11.2043 7.19965 9.05778
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.521 18.4045 13.7715 11.5139 9.98563

CAGE analysis