Hb_000003_250

Information

Type -
Description -
Location Contig3: 140247-145409
Sequence    

Annotation

kegg
ID rcu:RCOM_1454000
description glycerol-3-phosphate dehydrogenase, putative (EC:1.1.1.94)
nr
ID XP_002513119.1
description glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
swissprot
ID Q8S0G4
description Probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic OS=Oryza sativa subsp. japonica GN=Os01g0939600 PE=2 SV=1
trembl
ID B9RGG7
description Glycerol-3-phosphate dehydrogenase [NAD(+)] OS=Ricinus communis GN=RCOM_1454000 PE=3 SV=1
Gene Ontology
ID GO:0009331
description probable glycerol-3-phosphate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31394: 140372-145142
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_250 0.0 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
2 Hb_001014_030 0.0595596013 - - ATP binding protein, putative [Ricinus communis]
3 Hb_005463_100 0.0609579951 - - hypothetical protein POPTR_0001s08400g [Populus trichocarpa]
4 Hb_002046_180 0.0611895816 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
5 Hb_010128_080 0.0641051664 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Jatropha curcas]
6 Hb_000876_070 0.064794091 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
7 Hb_001799_210 0.0650979334 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
8 Hb_003177_030 0.0678626158 - - PREDICTED: uncharacterized protein LOC105635357 [Jatropha curcas]
9 Hb_008725_260 0.0682150907 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
10 Hb_002110_150 0.0685958743 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
11 Hb_002620_020 0.0692468667 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
12 Hb_001377_490 0.0697950137 - - PREDICTED: uncharacterized protein LOC105642821 [Jatropha curcas]
13 Hb_009178_030 0.0706914561 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000749_220 0.0707981161 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
15 Hb_004724_080 0.0719424138 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000066_080 0.0727094956 - - PREDICTED: mRNA cap guanine-N7 methyltransferase 2 isoform X2 [Jatropha curcas]
17 Hb_005144_160 0.0729318307 - - PREDICTED: uncharacterized protein LOC105628018 isoform X1 [Jatropha curcas]
18 Hb_065525_040 0.0730923114 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
19 Hb_000035_320 0.0742307113 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22 [Jatropha curcas]
20 Hb_015934_040 0.0743077878 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000003_250 Hb_000003_250 Hb_001014_030 Hb_001014_030 Hb_000003_250--Hb_001014_030 Hb_005463_100 Hb_005463_100 Hb_000003_250--Hb_005463_100 Hb_002046_180 Hb_002046_180 Hb_000003_250--Hb_002046_180 Hb_010128_080 Hb_010128_080 Hb_000003_250--Hb_010128_080 Hb_000876_070 Hb_000876_070 Hb_000003_250--Hb_000876_070 Hb_001799_210 Hb_001799_210 Hb_000003_250--Hb_001799_210 Hb_000840_250 Hb_000840_250 Hb_001014_030--Hb_000840_250 Hb_001633_210 Hb_001633_210 Hb_001014_030--Hb_001633_210 Hb_000614_250 Hb_000614_250 Hb_001014_030--Hb_000614_250 Hb_000297_010 Hb_000297_010 Hb_001014_030--Hb_000297_010 Hb_002450_020 Hb_002450_020 Hb_001014_030--Hb_002450_020 Hb_005463_100--Hb_002046_180 Hb_012019_010 Hb_012019_010 Hb_005463_100--Hb_012019_010 Hb_002110_150 Hb_002110_150 Hb_005463_100--Hb_002110_150 Hb_000684_470 Hb_000684_470 Hb_005463_100--Hb_000684_470 Hb_009767_110 Hb_009767_110 Hb_005463_100--Hb_009767_110 Hb_002046_180--Hb_012019_010 Hb_002046_180--Hb_002110_150 Hb_005779_060 Hb_005779_060 Hb_002046_180--Hb_005779_060 Hb_002046_180--Hb_000876_070 Hb_008725_260 Hb_008725_260 Hb_002046_180--Hb_008725_260 Hb_000395_190 Hb_000395_190 Hb_010128_080--Hb_000395_190 Hb_015934_040 Hb_015934_040 Hb_010128_080--Hb_015934_040 Hb_000099_080 Hb_000099_080 Hb_010128_080--Hb_000099_080 Hb_000866_220 Hb_000866_220 Hb_010128_080--Hb_000866_220 Hb_089032_040 Hb_089032_040 Hb_010128_080--Hb_089032_040 Hb_002739_100 Hb_002739_100 Hb_000876_070--Hb_002739_100 Hb_000876_070--Hb_005779_060 Hb_032202_190 Hb_032202_190 Hb_000876_070--Hb_032202_190 Hb_007691_030 Hb_007691_030 Hb_000876_070--Hb_007691_030 Hb_005618_170 Hb_005618_170 Hb_000876_070--Hb_005618_170 Hb_000465_160 Hb_000465_160 Hb_001799_210--Hb_000465_160 Hb_001009_270 Hb_001009_270 Hb_001799_210--Hb_001009_270 Hb_003177_030 Hb_003177_030 Hb_001799_210--Hb_003177_030 Hb_032208_090 Hb_032208_090 Hb_001799_210--Hb_032208_090 Hb_011344_210 Hb_011344_210 Hb_001799_210--Hb_011344_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.9976 13.9654 10.1005 17.0381 13.9868 17.7673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.6838 19.4453 28.559 11.6045 13.2531

CAGE analysis