Hb_000003_320

Information

Type -
Description -
Location Contig3: 191067-196700
Sequence    

Annotation

kegg
ID pop:POPTR_0003s20160g
description POPTRDRAFT_817608; hypothetical protein
nr
ID XP_012068599.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
swissprot
ID Q9FPS3
description Ubiquitin carboxyl-terminal hydrolase 24 OS=Arabidopsis thaliana GN=UBP24 PE=1 SV=1
trembl
ID A0A067KWA3
description Ubiquitin carboxyl-terminal hydrolase OS=Jatropha curcas GN=JCGZ_24490 PE=3 SV=1
Gene Ontology
ID GO:0005634
description ubiquitin carboxyl-terminal hydrolase 24 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31403: 191102-196656 , PASA_asmbl_31404: 193810-196310
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_320 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
2 Hb_000181_400 0.0685619222 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
3 Hb_003294_070 0.0692081035 - - hypothetical protein RCOM_1714550 [Ricinus communis]
4 Hb_002197_050 0.0719196561 - - hypothetical protein CICLE_v10002157mg [Citrus clementina]
5 Hb_000556_160 0.0734481189 - - PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Jatropha curcas]
6 Hb_002078_350 0.0746590465 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
7 Hb_007416_120 0.0793037014 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
8 Hb_000250_060 0.0827410316 - - PREDICTED: 28S ribosomal protein S29, mitochondrial [Jatropha curcas]
9 Hb_000907_110 0.0832931229 - - dihydroxyacetone kinase family protein [Populus trichocarpa]
10 Hb_000680_160 0.0838433538 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
11 Hb_001671_100 0.0841439702 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
12 Hb_000041_110 0.0843052389 - - PREDICTED: WW domain-binding protein 11 isoform X1 [Jatropha curcas]
13 Hb_033642_090 0.0846645269 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002391_310 0.0858253374 - - hypothetical protein PRUPE_ppa021315mg [Prunus persica]
15 Hb_002481_080 0.0868244609 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
16 Hb_000749_190 0.0871508154 - - PREDICTED: nucleolar GTP-binding protein 2 [Populus euphratica]
17 Hb_011386_010 0.0875794281 - - mitochondrial carrier protein, putative [Ricinus communis]
18 Hb_005188_080 0.0880178077 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
19 Hb_000185_030 0.0882425763 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
20 Hb_000107_330 0.0884573942 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Jatropha curcas]

Gene co-expression network

sample Hb_000003_320 Hb_000003_320 Hb_000181_400 Hb_000181_400 Hb_000003_320--Hb_000181_400 Hb_003294_070 Hb_003294_070 Hb_000003_320--Hb_003294_070 Hb_002197_050 Hb_002197_050 Hb_000003_320--Hb_002197_050 Hb_000556_160 Hb_000556_160 Hb_000003_320--Hb_000556_160 Hb_002078_350 Hb_002078_350 Hb_000003_320--Hb_002078_350 Hb_007416_120 Hb_007416_120 Hb_000003_320--Hb_007416_120 Hb_004324_130 Hb_004324_130 Hb_000181_400--Hb_004324_130 Hb_000907_110 Hb_000907_110 Hb_000181_400--Hb_000907_110 Hb_000181_400--Hb_003294_070 Hb_000181_400--Hb_007416_120 Hb_000111_290 Hb_000111_290 Hb_000181_400--Hb_000111_290 Hb_001876_050 Hb_001876_050 Hb_000181_400--Hb_001876_050 Hb_009079_030 Hb_009079_030 Hb_003294_070--Hb_009079_030 Hb_003294_070--Hb_004324_130 Hb_165928_030 Hb_165928_030 Hb_003294_070--Hb_165928_030 Hb_000181_320 Hb_000181_320 Hb_003294_070--Hb_000181_320 Hb_000137_090 Hb_000137_090 Hb_002197_050--Hb_000137_090 Hb_000948_160 Hb_000948_160 Hb_002197_050--Hb_000948_160 Hb_000431_170 Hb_000431_170 Hb_002197_050--Hb_000431_170 Hb_000312_080 Hb_000312_080 Hb_002197_050--Hb_000312_080 Hb_031340_050 Hb_031340_050 Hb_002197_050--Hb_031340_050 Hb_002686_030 Hb_002686_030 Hb_000556_160--Hb_002686_030 Hb_001341_170 Hb_001341_170 Hb_000556_160--Hb_001341_170 Hb_004724_150 Hb_004724_150 Hb_000556_160--Hb_004724_150 Hb_002499_040 Hb_002499_040 Hb_000556_160--Hb_002499_040 Hb_000556_160--Hb_003294_070 Hb_000185_030 Hb_000185_030 Hb_000556_160--Hb_000185_030 Hb_011386_010 Hb_011386_010 Hb_002078_350--Hb_011386_010 Hb_156279_020 Hb_156279_020 Hb_002078_350--Hb_156279_020 Hb_000373_070 Hb_000373_070 Hb_002078_350--Hb_000373_070 Hb_006831_140 Hb_006831_140 Hb_002078_350--Hb_006831_140 Hb_001470_030 Hb_001470_030 Hb_002078_350--Hb_001470_030 Hb_000035_180 Hb_000035_180 Hb_002078_350--Hb_000035_180 Hb_001671_100 Hb_001671_100 Hb_007416_120--Hb_001671_100 Hb_007416_120--Hb_001876_050 Hb_007416_120--Hb_004324_130 Hb_001999_310 Hb_001999_310 Hb_007416_120--Hb_001999_310 Hb_007416_120--Hb_000111_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.9278 18.3503 9.68113 13.3782 16.9736 18.2331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.6267 28.7751 18.455 27.4476 15.3416

CAGE analysis