Hb_000003_380

Information

Type -
Description -
Location Contig3: 224238-231549
Sequence    

Annotation

kegg
ID rcu:RCOM_1453650
description hypothetical protein
nr
ID XP_002513104.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8VY22
description Protein trichome birefringence-like 38 OS=Arabidopsis thaliana GN=TBL38 PE=2 SV=1
trembl
ID B9RGF2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1453650 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31414: 229988-231313
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_380 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002221_060 0.0331339725 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
3 Hb_000230_300 0.0564576824 - - PREDICTED: S-adenosylmethionine decarboxylase proenzyme 4 [Jatropha curcas]
4 Hb_004137_040 0.0668957458 - - PREDICTED: serine carboxypeptidase-like 42 [Jatropha curcas]
5 Hb_000483_450 0.0712112706 - - PREDICTED: anthranilate N-benzoyltransferase protein 1 [Jatropha curcas]
6 Hb_003376_020 0.0781353504 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000928_030 0.0795334261 transcription factor TF Family: bZIP PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5 [Jatropha curcas]
8 Hb_152910_050 0.0809786772 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
9 Hb_031022_030 0.0813215734 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7-like [Jatropha curcas]
10 Hb_004202_020 0.0840153588 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000028_190 0.0879123415 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
12 Hb_001021_120 0.0881887643 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-4 [Jatropha curcas]
13 Hb_001956_130 0.0883295316 - - catalytic, putative [Ricinus communis]
14 Hb_017434_010 0.0896136632 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
15 Hb_000103_200 0.0906719794 - - calmodulin binding protein, putative [Ricinus communis]
16 Hb_040852_010 0.0908909117 - - conserved hypothetical protein [Ricinus communis]
17 Hb_010883_170 0.0953347703 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
18 Hb_000103_220 0.0961658268 - - PREDICTED: uncharacterized protein LOC105632036 [Jatropha curcas]
19 Hb_031321_020 0.096419078 - - hypothetical protein POPTR_0003s15520g [Populus trichocarpa]
20 Hb_000358_260 0.0971868056 - - PREDICTED: lachrymatory-factor synthase-like [Vitis vinifera]

Gene co-expression network

sample Hb_000003_380 Hb_000003_380 Hb_002221_060 Hb_002221_060 Hb_000003_380--Hb_002221_060 Hb_000230_300 Hb_000230_300 Hb_000003_380--Hb_000230_300 Hb_004137_040 Hb_004137_040 Hb_000003_380--Hb_004137_040 Hb_000483_450 Hb_000483_450 Hb_000003_380--Hb_000483_450 Hb_003376_020 Hb_003376_020 Hb_000003_380--Hb_003376_020 Hb_000928_030 Hb_000928_030 Hb_000003_380--Hb_000928_030 Hb_002221_060--Hb_000230_300 Hb_002221_060--Hb_004137_040 Hb_002221_060--Hb_000483_450 Hb_000103_200 Hb_000103_200 Hb_002221_060--Hb_000103_200 Hb_002221_060--Hb_000928_030 Hb_000230_300--Hb_004137_040 Hb_005762_010 Hb_005762_010 Hb_000230_300--Hb_005762_010 Hb_000230_300--Hb_000103_200 Hb_000028_190 Hb_000028_190 Hb_000230_300--Hb_000028_190 Hb_004137_040--Hb_000028_190 Hb_004137_040--Hb_000483_450 Hb_004137_040--Hb_000928_030 Hb_004137_040--Hb_000103_200 Hb_004202_020 Hb_004202_020 Hb_000483_450--Hb_004202_020 Hb_000483_450--Hb_000028_190 Hb_003894_110 Hb_003894_110 Hb_000483_450--Hb_003894_110 Hb_000392_110 Hb_000392_110 Hb_000483_450--Hb_000392_110 Hb_040852_010 Hb_040852_010 Hb_003376_020--Hb_040852_010 Hb_003376_020--Hb_003894_110 Hb_152910_050 Hb_152910_050 Hb_003376_020--Hb_152910_050 Hb_098315_060 Hb_098315_060 Hb_003376_020--Hb_098315_060 Hb_000134_130 Hb_000134_130 Hb_003376_020--Hb_000134_130 Hb_000103_220 Hb_000103_220 Hb_003376_020--Hb_000103_220 Hb_000928_030--Hb_000028_190 Hb_052530_020 Hb_052530_020 Hb_000928_030--Hb_052530_020 Hb_000928_030--Hb_000103_200 Hb_000358_260 Hb_000358_260 Hb_000928_030--Hb_000358_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.346677 5.32352 7.05636 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 4.1143

CAGE analysis