Hb_000003_400

Information

Type -
Description -
Location Contig3: 243573-244421
Sequence    

Annotation

kegg
ID rcu:RCOM_0472100
description short chain alcohol dehydrogenase, putative (EC:1.1.1.100)
nr
ID XP_002527336.1
description short chain alcohol dehydrogenase, putative [Ricinus communis]
swissprot
ID Q9C826
description Xanthoxin dehydrogenase OS=Arabidopsis thaliana GN=ABA2 PE=1 SV=1
trembl
ID B9SMW7
description Short chain alcohol dehydrogenase, putative OS=Ricinus communis GN=RCOM_0472100 PE=4 SV=1
Gene Ontology
ID GO:0004022
description xanthoxin dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31416: 243202-245480 , PASA_asmbl_31417: 244262-244675 , PASA_asmbl_31418: 244970-245387
cDNA
(Sanger)
(ID:Location)		 019_J02.ab1: 243739-245480 , 039_H10.ab1: 243752-245480

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_400 0.0 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
2 Hb_002811_040 0.0566028466 - - 5'->3' exoribonuclease, putative [Ricinus communis]
3 Hb_000094_090 0.0702792431 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
4 Hb_000868_120 0.0777445617 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]
5 Hb_023226_070 0.0805322958 - - conserved hypothetical protein [Ricinus communis]
6 Hb_010287_020 0.0814349607 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
7 Hb_000445_060 0.0816694626 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
8 Hb_004976_010 0.0836411666 - - hypothetical protein RCOM_1429110 [Ricinus communis]
9 Hb_002374_290 0.0842024911 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X1 [Jatropha curcas]
10 Hb_004870_050 0.0859148855 - - PREDICTED: ATP-dependent RNA helicase DBP3 [Jatropha curcas]
11 Hb_012565_050 0.0865051591 - - PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Jatropha curcas]
12 Hb_000375_290 0.0896372225 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
13 Hb_002110_160 0.0897804136 - - PREDICTED: phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [Jatropha curcas]
14 Hb_001439_220 0.090008724 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
15 Hb_001225_030 0.0906326927 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 1 [Jatropha curcas]
16 Hb_026980_020 0.0907702958 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
17 Hb_004619_060 0.0909520952 - - PREDICTED: uncharacterized protein At1g10890-like [Nelumbo nucifera]
18 Hb_000282_090 0.092328755 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
19 Hb_033642_120 0.0925565937 - - PREDICTED: nucleolar GTP-binding protein 2 [Vitis vinifera]
20 Hb_000645_170 0.0928315213 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000003_400 Hb_000003_400 Hb_002811_040 Hb_002811_040 Hb_000003_400--Hb_002811_040 Hb_000094_090 Hb_000094_090 Hb_000003_400--Hb_000094_090 Hb_000868_120 Hb_000868_120 Hb_000003_400--Hb_000868_120 Hb_023226_070 Hb_023226_070 Hb_000003_400--Hb_023226_070 Hb_010287_020 Hb_010287_020 Hb_000003_400--Hb_010287_020 Hb_000445_060 Hb_000445_060 Hb_000003_400--Hb_000445_060 Hb_000529_060 Hb_000529_060 Hb_002811_040--Hb_000529_060 Hb_002811_040--Hb_000445_060 Hb_008387_010 Hb_008387_010 Hb_002811_040--Hb_008387_010 Hb_002811_040--Hb_023226_070 Hb_004724_370 Hb_004724_370 Hb_002811_040--Hb_004724_370 Hb_000363_120 Hb_000363_120 Hb_000094_090--Hb_000363_120 Hb_000809_160 Hb_000809_160 Hb_000094_090--Hb_000809_160 Hb_000723_110 Hb_000723_110 Hb_000094_090--Hb_000723_110 Hb_000373_230 Hb_000373_230 Hb_000094_090--Hb_000373_230 Hb_000094_090--Hb_023226_070 Hb_004870_050 Hb_004870_050 Hb_000094_090--Hb_004870_050 Hb_000868_120--Hb_000445_060 Hb_000868_120--Hb_010287_020 Hb_033642_120 Hb_033642_120 Hb_000868_120--Hb_033642_120 Hb_000676_330 Hb_000676_330 Hb_000868_120--Hb_000676_330 Hb_001439_220 Hb_001439_220 Hb_000868_120--Hb_001439_220 Hb_000661_120 Hb_000661_120 Hb_000868_120--Hb_000661_120 Hb_060094_020 Hb_060094_020 Hb_023226_070--Hb_060094_020 Hb_001754_030 Hb_001754_030 Hb_023226_070--Hb_001754_030 Hb_023226_070--Hb_000445_060 Hb_023226_070--Hb_000723_110 Hb_006452_180 Hb_006452_180 Hb_010287_020--Hb_006452_180 Hb_002110_160 Hb_002110_160 Hb_010287_020--Hb_002110_160 Hb_001699_010 Hb_001699_010 Hb_010287_020--Hb_001699_010 Hb_010287_020--Hb_033642_120 Hb_010287_020--Hb_000445_060 Hb_000996_020 Hb_000996_020 Hb_000445_060--Hb_000996_020 Hb_000110_350 Hb_000110_350 Hb_000445_060--Hb_000110_350 Hb_002768_050 Hb_002768_050 Hb_000445_060--Hb_002768_050 Hb_000445_060--Hb_000661_120 Hb_000373_170 Hb_000373_170 Hb_000445_060--Hb_000373_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.5639 51.8449 39.1614 21.6569 21.7314 17.4071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.5397 20.6625 8.83518 21.3533 29.1301

CAGE analysis