Hb_000003_410

Information

Type -
Description -
Location Contig3: 247053-258319
Sequence    

Annotation

kegg
ID pop:POPTR_0003s20020g
description POPTRDRAFT_555007; hypothetical protein
nr
ID XP_012068619.1
description PREDICTED: intron-binding protein aquarius [Jatropha curcas]
swissprot
ID O60306
description Intron-binding protein aquarius OS=Homo sapiens GN=AQR PE=1 SV=4
trembl
ID A0A067L8R6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24503 PE=4 SV=1
Gene Ontology
ID GO:0005681
description intron-binding protein aquarius

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31420: 247299-251918 , PASA_asmbl_31421: 251921-258438 , PASA_asmbl_31423: 257453-257655
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_410 0.0 - - PREDICTED: intron-binding protein aquarius [Jatropha curcas]
2 Hb_000958_050 0.0557593507 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
3 Hb_001133_030 0.0601394183 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
4 Hb_000934_210 0.0633501927 - - suppressor of ty, putative [Ricinus communis]
5 Hb_003216_090 0.0647838944 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]
6 Hb_021596_010 0.0676377327 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
7 Hb_000009_410 0.0724476984 transcription factor TF Family: SET hypothetical protein POPTR_0007s12130g [Populus trichocarpa]
8 Hb_000645_130 0.072989126 - - PREDICTED: bromodomain and WD repeat-containing protein 3 [Jatropha curcas]
9 Hb_003047_020 0.0732148702 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
10 Hb_001951_170 0.0735582889 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
11 Hb_005701_050 0.0750109707 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
12 Hb_011689_030 0.0764939517 - - 80 kD MCM3-associated protein, putative [Ricinus communis]
13 Hb_000665_230 0.0780306538 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
14 Hb_009486_170 0.0802564171 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
15 Hb_000925_090 0.0806936098 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
16 Hb_005408_030 0.0808378292 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
17 Hb_002521_020 0.0816094795 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like isoform X2 [Jatropha curcas]
18 Hb_007120_060 0.0820307779 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
19 Hb_006031_010 0.0827696226 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X3 [Jatropha curcas]
20 Hb_012244_020 0.0828959546 - - calpain, putative [Ricinus communis]

Gene co-expression network

sample Hb_000003_410 Hb_000003_410 Hb_000958_050 Hb_000958_050 Hb_000003_410--Hb_000958_050 Hb_001133_030 Hb_001133_030 Hb_000003_410--Hb_001133_030 Hb_000934_210 Hb_000934_210 Hb_000003_410--Hb_000934_210 Hb_003216_090 Hb_003216_090 Hb_000003_410--Hb_003216_090 Hb_021596_010 Hb_021596_010 Hb_000003_410--Hb_021596_010 Hb_000009_410 Hb_000009_410 Hb_000003_410--Hb_000009_410 Hb_005701_050 Hb_005701_050 Hb_000958_050--Hb_005701_050 Hb_000958_050--Hb_000934_210 Hb_000645_130 Hb_000645_130 Hb_000958_050--Hb_000645_130 Hb_002007_110 Hb_002007_110 Hb_000958_050--Hb_002007_110 Hb_012055_110 Hb_012055_110 Hb_000958_050--Hb_012055_110 Hb_000925_090 Hb_000925_090 Hb_001133_030--Hb_000925_090 Hb_009486_170 Hb_009486_170 Hb_001133_030--Hb_009486_170 Hb_012244_020 Hb_012244_020 Hb_001133_030--Hb_012244_020 Hb_011689_030 Hb_011689_030 Hb_001133_030--Hb_011689_030 Hb_002521_020 Hb_002521_020 Hb_001133_030--Hb_002521_020 Hb_027472_220 Hb_027472_220 Hb_000934_210--Hb_027472_220 Hb_000934_210--Hb_012244_020 Hb_123531_010 Hb_123531_010 Hb_000934_210--Hb_123531_010 Hb_000934_210--Hb_002007_110 Hb_002357_070 Hb_002357_070 Hb_000934_210--Hb_002357_070 Hb_000003_100 Hb_000003_100 Hb_003216_090--Hb_000003_100 Hb_001951_170 Hb_001951_170 Hb_003216_090--Hb_001951_170 Hb_000331_580 Hb_000331_580 Hb_003216_090--Hb_000331_580 Hb_000665_230 Hb_000665_230 Hb_003216_090--Hb_000665_230 Hb_001904_030 Hb_001904_030 Hb_003216_090--Hb_001904_030 Hb_003047_020 Hb_003047_020 Hb_021596_010--Hb_003047_020 Hb_000367_020 Hb_000367_020 Hb_021596_010--Hb_000367_020 Hb_021596_010--Hb_000958_050 Hb_005408_030 Hb_005408_030 Hb_021596_010--Hb_005408_030 Hb_008686_020 Hb_008686_020 Hb_021596_010--Hb_008686_020 Hb_000009_410--Hb_005408_030 Hb_006531_020 Hb_006531_020 Hb_000009_410--Hb_006531_020 Hb_000009_410--Hb_000934_210 Hb_000009_410--Hb_001951_170 Hb_011021_050 Hb_011021_050 Hb_000009_410--Hb_011021_050 Hb_006031_010 Hb_006031_010 Hb_000009_410--Hb_006031_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.32702 18.9588 9.99265 7.45028 9.0104 9.09774
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.24701 3.67922 7.26461 13.3445 17.0347

CAGE analysis