Hb_000003_420

Information

Type -
Description -
Location Contig3: 259864-262376
Sequence    

Annotation

kegg
ID rcu:RCOM_1453200
description o-methyltransferase, putative (EC:2.1.1.68)
nr
ID XP_002513089.1
description o-methyltransferase, putative [Ricinus communis]
swissprot
ID Q43046
description Caffeic acid 3-O-methyltransferase 1 OS=Populus kitakamiensis GN=HOMT1 PE=3 SV=1
trembl
ID B9RGD7
description O-methyltransferase, putative OS=Ricinus communis GN=RCOM_1453200 PE=4 SV=1
Gene Ontology
ID GO:0046983
description caffeic acid o-methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31424: 260171-260319
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_420 0.0 - - o-methyltransferase, putative [Ricinus communis]
2 Hb_000397_090 0.0991034112 - - PREDICTED: uncharacterized protein LOC105641235 [Jatropha curcas]
3 Hb_000473_080 0.1041222522 - - PREDICTED: lipase-like PAD4 [Populus euphratica]
4 Hb_029866_050 0.1112970144 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF4 [Jatropha curcas]
5 Hb_073119_010 0.1158040208 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
6 Hb_006698_020 0.1182549829 - - hypothetical protein JCGZ_04585 [Jatropha curcas]
7 Hb_000363_110 0.1184282843 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 21 [Jatropha curcas]
8 Hb_000359_080 0.119940428 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
9 Hb_002272_140 0.1283965534 - - PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Jatropha curcas]
10 Hb_000181_080 0.1295522982 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
11 Hb_002284_020 0.1306591328 - - PREDICTED: probable inorganic phosphate transporter 1-9 [Jatropha curcas]
12 Hb_019961_010 0.131311101 - - hypothetical protein POPTR_0017s11350g [Populus trichocarpa]
13 Hb_117127_010 0.1337213042 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH106 [Jatropha curcas]
14 Hb_138628_010 0.1344189961 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
15 Hb_000098_250 0.1382751922 - - UDP-glucose flavonoid 3-O-glucosyltransferase [Medicago truncatula]
16 Hb_000103_400 0.1383851675 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
17 Hb_003914_050 0.1414015251 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
18 Hb_007433_020 0.1416538369 - - hypothetical protein VITISV_005320 [Vitis vinifera]
19 Hb_174380_010 0.1417488442 - - kinase, putative [Ricinus communis]
20 Hb_021596_070 0.1421495792 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000003_420 Hb_000003_420 Hb_000397_090 Hb_000397_090 Hb_000003_420--Hb_000397_090 Hb_000473_080 Hb_000473_080 Hb_000003_420--Hb_000473_080 Hb_029866_050 Hb_029866_050 Hb_000003_420--Hb_029866_050 Hb_073119_010 Hb_073119_010 Hb_000003_420--Hb_073119_010 Hb_006698_020 Hb_006698_020 Hb_000003_420--Hb_006698_020 Hb_000363_110 Hb_000363_110 Hb_000003_420--Hb_000363_110 Hb_000397_090--Hb_000363_110 Hb_001345_030 Hb_001345_030 Hb_000397_090--Hb_001345_030 Hb_006911_060 Hb_006911_060 Hb_000397_090--Hb_006911_060 Hb_000397_090--Hb_006698_020 Hb_000359_080 Hb_000359_080 Hb_000397_090--Hb_000359_080 Hb_000473_080--Hb_000359_080 Hb_000752_020 Hb_000752_020 Hb_000473_080--Hb_000752_020 Hb_000473_080--Hb_073119_010 Hb_000103_400 Hb_000103_400 Hb_000473_080--Hb_000103_400 Hb_002272_140 Hb_002272_140 Hb_000473_080--Hb_002272_140 Hb_029866_050--Hb_006698_020 Hb_000649_160 Hb_000649_160 Hb_029866_050--Hb_000649_160 Hb_001568_120 Hb_001568_120 Hb_029866_050--Hb_001568_120 Hb_029866_050--Hb_000359_080 Hb_029866_050--Hb_000473_080 Hb_003556_070 Hb_003556_070 Hb_073119_010--Hb_003556_070 Hb_000098_250 Hb_000098_250 Hb_073119_010--Hb_000098_250 Hb_000819_010 Hb_000819_010 Hb_073119_010--Hb_000819_010 Hb_000094_010 Hb_000094_010 Hb_073119_010--Hb_000094_010 Hb_017604_020 Hb_017604_020 Hb_073119_010--Hb_017604_020 Hb_013720_010 Hb_013720_010 Hb_006698_020--Hb_013720_010 Hb_008667_030 Hb_008667_030 Hb_006698_020--Hb_008667_030 Hb_000000_070 Hb_000000_070 Hb_006698_020--Hb_000000_070 Hb_000331_710 Hb_000331_710 Hb_006698_020--Hb_000331_710 Hb_002529_080 Hb_002529_080 Hb_006698_020--Hb_002529_080 Hb_000363_110--Hb_001345_030 Hb_002234_200 Hb_002234_200 Hb_000363_110--Hb_002234_200 Hb_013607_010 Hb_013607_010 Hb_000363_110--Hb_013607_010 Hb_098160_010 Hb_098160_010 Hb_000363_110--Hb_098160_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.212956 9.47947 2.20507 1.96891 0.0697029 0.0127023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0660041 0.0519258 0.146061 1.63852 0.650448

CAGE analysis