Hb_000003_480

Information

Type -
Description -
Location Contig3: 344887-348401
Sequence    

Annotation

kegg
ID rcu:RCOM_1491250
description Nucleoporin NUP53, putative
nr
ID XP_012069105.1
description PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
swissprot
ID O04326
description Nuclear pore complex protein NUP35 OS=Arabidopsis thaliana GN=NUP35 PE=1 SV=1
trembl
ID A0A067L0W8
description Nuclear pore complex protein NUP35 OS=Jatropha curcas GN=JCGZ_24877 PE=3 SV=1
Gene Ontology
ID GO:0005643
description nucleoporin nup53

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31428: 344862-348401 , PASA_asmbl_31429: 344883-348306
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_480 0.0 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
2 Hb_000031_220 0.0787417751 - - PREDICTED: UDP-glycosyltransferase 73B4-like [Jatropha curcas]
3 Hb_000260_220 0.0814186576 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
4 Hb_005054_290 0.0841798089 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
5 Hb_003847_080 0.0874798353 - - PREDICTED: uncharacterized protein LOC105647792 isoform X3 [Jatropha curcas]
6 Hb_002982_040 0.0892929131 - - mta/sah nucleosidase, putative [Ricinus communis]
7 Hb_106724_020 0.0923094098 - - PREDICTED: actin-related protein 2/3 complex subunit 1A-like isoform X1 [Populus euphratica]
8 Hb_001279_140 0.0925383262 - - PREDICTED: cystinosin homolog [Jatropha curcas]
9 Hb_001663_030 0.0943202435 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
10 Hb_000953_020 0.0949240729 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
11 Hb_000421_210 0.0949368045 - - conserved hypothetical protein [Ricinus communis]
12 Hb_050455_010 0.0966100736 - - PREDICTED: prosaposin isoform X2 [Jatropha curcas]
13 Hb_093084_050 0.0986078529 - - PREDICTED: uncharacterized protein LOC105640739 [Jatropha curcas]
14 Hb_000329_630 0.0990579229 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
15 Hb_185830_020 0.0991031385 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_000802_080 0.0991359234 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
17 Hb_001102_140 0.0998355062 - - PREDICTED: methyl-CpG-binding domain-containing protein 2-like [Jatropha curcas]
18 Hb_000571_120 0.100649936 - - importin beta-1, putative [Ricinus communis]
19 Hb_004032_150 0.1041777652 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
20 Hb_001936_020 0.1050736785 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000003_480 Hb_000003_480 Hb_000031_220 Hb_000031_220 Hb_000003_480--Hb_000031_220 Hb_000260_220 Hb_000260_220 Hb_000003_480--Hb_000260_220 Hb_005054_290 Hb_005054_290 Hb_000003_480--Hb_005054_290 Hb_003847_080 Hb_003847_080 Hb_000003_480--Hb_003847_080 Hb_002982_040 Hb_002982_040 Hb_000003_480--Hb_002982_040 Hb_106724_020 Hb_106724_020 Hb_000003_480--Hb_106724_020 Hb_000031_220--Hb_002982_040 Hb_002027_270 Hb_002027_270 Hb_000031_220--Hb_002027_270 Hb_002054_040 Hb_002054_040 Hb_000031_220--Hb_002054_040 Hb_000031_220--Hb_000260_220 Hb_002784_060 Hb_002784_060 Hb_000031_220--Hb_002784_060 Hb_010931_120 Hb_010931_120 Hb_000260_220--Hb_010931_120 Hb_000260_220--Hb_002054_040 Hb_002374_050 Hb_002374_050 Hb_000260_220--Hb_002374_050 Hb_001663_030 Hb_001663_030 Hb_000260_220--Hb_001663_030 Hb_016657_010 Hb_016657_010 Hb_000260_220--Hb_016657_010 Hb_000000_460 Hb_000000_460 Hb_005054_290--Hb_000000_460 Hb_000329_630 Hb_000329_630 Hb_005054_290--Hb_000329_630 Hb_001439_100 Hb_001439_100 Hb_005054_290--Hb_001439_100 Hb_001102_140 Hb_001102_140 Hb_005054_290--Hb_001102_140 Hb_000023_280 Hb_000023_280 Hb_005054_290--Hb_000023_280 Hb_012305_050 Hb_012305_050 Hb_003847_080--Hb_012305_050 Hb_004128_190 Hb_004128_190 Hb_003847_080--Hb_004128_190 Hb_185830_020 Hb_185830_020 Hb_003847_080--Hb_185830_020 Hb_001124_210 Hb_001124_210 Hb_003847_080--Hb_001124_210 Hb_002078_150 Hb_002078_150 Hb_003847_080--Hb_002078_150 Hb_000363_500 Hb_000363_500 Hb_003847_080--Hb_000363_500 Hb_050455_010 Hb_050455_010 Hb_002982_040--Hb_050455_010 Hb_002982_040--Hb_185830_020 Hb_187739_020 Hb_187739_020 Hb_002982_040--Hb_187739_020 Hb_000866_030 Hb_000866_030 Hb_002982_040--Hb_000866_030 Hb_000069_160 Hb_000069_160 Hb_002982_040--Hb_000069_160 Hb_000630_050 Hb_000630_050 Hb_106724_020--Hb_000630_050 Hb_003813_130 Hb_003813_130 Hb_106724_020--Hb_003813_130 Hb_004055_030 Hb_004055_030 Hb_106724_020--Hb_004055_030 Hb_106724_020--Hb_001102_140 Hb_000808_280 Hb_000808_280 Hb_106724_020--Hb_000808_280 Hb_001454_130 Hb_001454_130 Hb_106724_020--Hb_001454_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.0329 30.629 8.18211 30.5455 30.4863 60.9718
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
62.5046 32.3062 34.4496 35.0279 13.6388

CAGE analysis