Hb_000003_540

Information

Type -
Description -
Location Contig3: 380316-387172
Sequence    

Annotation

kegg
ID rcu:RCOM_1491170
description DNA binding protein, putative
nr
ID XP_012069098.1
description PREDICTED: homeobox-leucine zipper protein ATHB-15 [Jatropha curcas]
swissprot
ID Q9ZU11
description Homeobox-leucine zipper protein ATHB-15 OS=Arabidopsis thaliana GN=ATHB-15 PE=1 SV=1
trembl
ID A0A067KXE1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24870 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox-leucine zipper protein athb-15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31431: 380385-387943
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_540 0.0 - - PREDICTED: homeobox-leucine zipper protein ATHB-15 [Jatropha curcas]
2 Hb_005784_040 0.0997222034 - - PREDICTED: uncharacterized protein LOC105645160 isoform X1 [Jatropha curcas]
3 Hb_002631_280 0.1063315888 - - PREDICTED: ubiquitin isoform X2 [Eucalyptus grandis]
4 Hb_000670_050 0.1173553902 transcription factor TF Family: MYB hypothetical protein JCGZ_16088 [Jatropha curcas]
5 Hb_000245_080 0.1212746637 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-15 [Jatropha curcas]
6 Hb_002344_130 0.1296983017 - - PREDICTED: copper transporter 5 [Jatropha curcas]
7 Hb_181385_010 0.134271591 - - PREDICTED: uncharacterized protein LOC105650319 [Jatropha curcas]
8 Hb_003567_030 0.1358742076 - - PREDICTED: nifU-like protein 4, mitochondrial [Jatropha curcas]
9 Hb_000167_080 0.1365725109 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
10 Hb_001357_150 0.1379358126 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
11 Hb_000384_070 0.1390933341 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000521_160 0.1400610869 - - conserved hypothetical protein [Ricinus communis]
13 Hb_074715_010 0.1404689426 - - PREDICTED: disease resistance protein RPS6-like isoform X2 [Jatropha curcas]
14 Hb_060715_010 0.1413437553 - - PREDICTED: notchless protein homolog [Gossypium raimondii]
15 Hb_001287_080 0.1433023494 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000696_160 0.1441779586 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
17 Hb_059480_010 0.1464911759 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
18 Hb_000406_080 0.1468559654 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
19 Hb_000538_240 0.1474966016 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
20 Hb_002245_030 0.1477260329 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000003_540 Hb_000003_540 Hb_005784_040 Hb_005784_040 Hb_000003_540--Hb_005784_040 Hb_002631_280 Hb_002631_280 Hb_000003_540--Hb_002631_280 Hb_000670_050 Hb_000670_050 Hb_000003_540--Hb_000670_050 Hb_000245_080 Hb_000245_080 Hb_000003_540--Hb_000245_080 Hb_002344_130 Hb_002344_130 Hb_000003_540--Hb_002344_130 Hb_181385_010 Hb_181385_010 Hb_000003_540--Hb_181385_010 Hb_005784_040--Hb_002631_280 Hb_139294_010 Hb_139294_010 Hb_005784_040--Hb_139294_010 Hb_000116_450 Hb_000116_450 Hb_005784_040--Hb_000116_450 Hb_001357_150 Hb_001357_150 Hb_005784_040--Hb_001357_150 Hb_001278_100 Hb_001278_100 Hb_005784_040--Hb_001278_100 Hb_000384_070 Hb_000384_070 Hb_002631_280--Hb_000384_070 Hb_000538_240 Hb_000538_240 Hb_002631_280--Hb_000538_240 Hb_011671_480 Hb_011671_480 Hb_002631_280--Hb_011671_480 Hb_000086_170 Hb_000086_170 Hb_002631_280--Hb_000086_170 Hb_000146_050 Hb_000146_050 Hb_000670_050--Hb_000146_050 Hb_000982_060 Hb_000982_060 Hb_000670_050--Hb_000982_060 Hb_004473_040 Hb_004473_040 Hb_000670_050--Hb_004473_040 Hb_004310_020 Hb_004310_020 Hb_000670_050--Hb_004310_020 Hb_010712_030 Hb_010712_030 Hb_000670_050--Hb_010712_030 Hb_000060_040 Hb_000060_040 Hb_000670_050--Hb_000060_040 Hb_024879_010 Hb_024879_010 Hb_000245_080--Hb_024879_010 Hb_005539_310 Hb_005539_310 Hb_000245_080--Hb_005539_310 Hb_006065_050 Hb_006065_050 Hb_000245_080--Hb_006065_050 Hb_000359_140 Hb_000359_140 Hb_000245_080--Hb_000359_140 Hb_001217_040 Hb_001217_040 Hb_000245_080--Hb_001217_040 Hb_000111_030 Hb_000111_030 Hb_002344_130--Hb_000111_030 Hb_000023_290 Hb_000023_290 Hb_002344_130--Hb_000023_290 Hb_002344_130--Hb_000245_080 Hb_145629_010 Hb_145629_010 Hb_002344_130--Hb_145629_010 Hb_001747_030 Hb_001747_030 Hb_002344_130--Hb_001747_030 Hb_000406_080 Hb_000406_080 Hb_181385_010--Hb_000406_080 Hb_000125_080 Hb_000125_080 Hb_181385_010--Hb_000125_080 Hb_181385_010--Hb_004473_040 Hb_002983_050 Hb_002983_050 Hb_181385_010--Hb_002983_050 Hb_000417_040 Hb_000417_040 Hb_181385_010--Hb_000417_040 Hb_001057_040 Hb_001057_040 Hb_181385_010--Hb_001057_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0363 8.72923 4.76655 21.4962 7.97359 8.5543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4943 16.128 3.79377 4.60437 4.84684

CAGE analysis